# Generated by roxygen2: do not edit by hand

S3method(plot,cm_res)
S3method(plot,enrich_res)
S3method(print,reporter_score)
S3method(print,rs_by_cm)
export("%>%")
export(GRSA)
export(GRSA_by_cm)
export(KO_enrich)
export(KO_fisher)
export(KO_gsa)
export(KO_gsea)
export(KO_gsva)
export(KO_padog)
export(KO_safe)
export(KO_sea)
export(RSA)
export(RSA_by_cm)
export(as.enrich_res)
export(c_means)
export(c_net_from_pathway_xml)
export(cm_test_k)
export(combine_rs_res)
export(custom_modulelist)
export(custom_modulelist_from_org)
export(download_org_pathway)
export(export_report_table)
export(extract_cluster)
export(gene2ko)
export(get_KOs)
export(get_all_pathway_net_index)
export(get_features)
export(get_org_pathway)
export(get_reporter_score)
export(ko.test)
export(load_CARDinfo)
export(load_CAZy_info)
export(load_CPDlist)
export(load_Compound_htable)
export(load_Enzyme_htable)
export(load_Enzyme_info)
export(load_GOinfo)
export(load_GOlist)
export(load_KO_desc)
export(load_KO_htable)
export(load_KOlist)
export(load_Module_htable)
export(load_Pathway_htable)
export(load_htable)
export(load_org_pathway)
export(load_pathway_xml_ls)
export(modify_description)
export(pathway_net_index)
export(plot_KEGG_map)
export(plot_KOs_box)
export(plot_KOs_distribution)
export(plot_KOs_heatmap)
export(plot_KOs_in_pathway)
export(plot_KOs_network)
export(plot_c_means)
export(plot_enrich_res)
export(plot_features_box)
export(plot_features_distribution)
export(plot_features_heatmap)
export(plot_features_in_pathway)
export(plot_features_network)
export(plot_htable)
export(plot_pathway_net)
export(plot_report)
export(plot_report_bar)
export(plot_report_circle_packing)
export(plot_significance)
export(pvalue2zs)
export(reporter_score)
export(transform_modulelist)
export(up_level_KO)
export(update_CARDinfo)
export(update_CAZy_info)
export(update_Enzyme_info)
export(update_GOinfo)
export(update_GOlist)
export(update_KEGG)
export(update_KO_file)
export(update_htable)
export(update_org_pathway)
export(update_pathway_xml_ls)
import(dplyr)
import(ggplot2)
importFrom(magrittr,"%>%")
importFrom(pcutils,get_cols)
importFrom(pcutils,lib_ps)
importFrom(pcutils,strsplit2)
importFrom(stats,cor)
importFrom(stats,cor.test)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,quantile)
importFrom(stats,reorder)
importFrom(stats,rnorm)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,var)
importFrom(utils,data)
importFrom(utils,download.file)
importFrom(utils,head)
importFrom(utils,packageName)
importFrom(utils,tail)
importFrom(utils,untar)
