BBB_NMP_GP_subset       Example for "gp" format specification
BBB_NMP_ad_subset       Example for "ad" format specification
BBB_NMP_pl_subset       Example for "pl" format specification
BBB_PE_gt_subset        Example for "gt" format specification
BBB_samples             A file with names or IDs for ten samples.
cumhbd                  Computes the realized inbreeding coefficient
cumkin                  Computes the realized kinship
genoex                  Subset of a dataset with genotypes for 20
                        sheeps
genosim                 Example from a small simulated data set
hbd1                    The result of local IBD probabilities for a
                        pair of individuals among the 18 cows from the
                        Amsterdam Island.
hbd2                    The result of local IBD probabilities for a
                        pair of individuals among the 18 cows from the
                        Amsterdam Island (recent only).
kintaf_mix4l            The result of a kinship analysis on 18 cattle
                        from the Amsterdam Island.
map1                    The map for local IBD probabilities for a pair
                        of individuals among the 18 cows from the
                        Amsterdam Island (recent only).
merge_zres              Merge several zres objects generated by zoorun
predhbd                 Extracts the IBD probabilities from the kres
                        object
probhbd                 Extracts the HBD probabilities from the zres
                        object
rara_mix10l             The result of an analysis on 22 sheeps from
                        Rasa Aragonesa population.
realized                Extracts the realized autozygosity from the
                        zres object
rohbd                   Extracts the HBD segments from the zres object
soay_mix10l             The result of an analysis on 110 sheeps from
                        the Soay population.
typs                    Subset of a dataset with genotypes for 6
                        individuals from a cattle population.
typsfrq                 A file with marker allele frequencies for the
                        cattle population.
update_zres             Update one main zres object with new results
wilt_mix10l             The result of an analysis on 23 sheeps from
                        Wiltshire population.
zoodata                 Read the genotype data file
zookin                  Use the ZooRoH model to estimate kinship
                        between pairs of individuals
zoomodel                Define the model for the RZooRoH
zooplot_hbdseg          Plot HBD segments identified with the ZooROH
                        model
zooplot_individuals     Plot individual curves with proportion of the
                        genome in each HBD class or cumulated
                        proportion in HBD classes with rates smaller
                        than a threshold.
zooplot_partitioning    Plot the partitioning of the genome in
                        different HBD classes for each individual
zooplot_prophbd         Plot proportion of the genome associated with
                        different HBD classes
zoorun                  Run the ZooRoH model
