.scelestial             Internal function for running scelestial
                        algorithm.
.synthesis              Internal function for generating synthetic
                        single-cell data through simulation of tumor
                        growth and evolution.
Li                      Bladder invasive single cell tumor dataset
RScelestial             RScelestial: An R wrapper for scelestial
                        algorithm for single-cell lineage tree
                        reconstruction through an approximation
                        algorithm based on Steiner tree problem
as.mutation.matrix      Conversion of ten-state sequencing matrix to
                        0/1-mutation matrix.
as.ten.state.matrix     Conversion of 0/1 matrix to 10-state matrix
as.ten.state.matrix.from.node.seq
                        Generates 10-state sequence matrix from
                        name/10-char string matrix.
distance.matrix.scelestial
                        Calculates distance matrix for result of
                        scelestial
distance.matrix.tree    Calculates distance matrix for a nodes on a
                        tree.
distance.matrix.true.tree
                        Calculates distance matrix for a synthetized
                        data
my.dfs                  Runs DFS on tree and calculates parent of each
                        node as well as depth and upper-depth of nodes.
my.general.dfs          Running depth first search on a tree and
                        calling functions on entrance/exit events
read.sequence.table     Read mutation table
scelestial              Infer the single-cell phylogenetic tree
synthesis               Synthesize single-cell data through tumor
                        simulation
tree.plot               Plotting the tree
