R: Robust Copy Number Alteration Detection (RCNA)

# Robust Copy Number Alteration Detection (RCNA)

## Documentation for package ‘RCNA’ version 1.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

correct_gc_bias | correct_gc_bias: Estimate and correct GC bias in coverage
correct_gc_bias.default | correct_gc_bias: Estimate and correct GC bias in coverage
correct_gc_bias.RCNA_object | correct_gc_bias: Estimate and correct GC bias in coverage
create_RCNA_object | RCNA_object constructor
estimate_feature_score | estimate_feature_score: Estimate CNV score for each gene in the annotation file
estimate_feature_score.default | estimate_feature_score: Estimate CNV score for each gene in the annotation file
estimate_feature_score.RCNA_object | estimate_feature_score: Estimate CNV score for each gene in the annotation file
estimate_nkr | estimate_nkr: Estimate CNA "normal" karyotype ranges
estimate_nkr.default | estimate_nkr: Estimate CNA "normal" karyotype ranges
estimate_nkr.RCNA_object | estimate_nkr: Estimate CNA "normal" karyotype ranges
example_obj | Example RCNA_object
RCNA_analysis | RCNA_analysis constructor
RCNA_analysis-class | RCNA_analysis constructor
RCNA_object | RCNA.object definition
RCNA_object-class | RCNA.object definition
run_RCNA | run_RCNA: Perform RCNA copy number detection workflow
run_RCNA.default | run_RCNA: Perform RCNA copy number detection workflow
run_RCNA.RCNA_object | run_RCNA: Perform RCNA copy number detection workflow