R: Estimation of R0 and Real-Time Reproduction Number from Epidemics

# Estimation of R0 and Real-Time Reproduction Number from Epidemics

## Documentation for package ‘R0’ version 1.3-1

- DESCRIPTION file
- Code demos. Use demo() to run them.

## Help Pages

est.GT | Estimate generation time distribution
estimate.R | Estimate reproduction number (R0 or Rt) for one incidence dataset using available methods
generation.time | Generation Time distribution
Germany.1918 | Germany 1918 dataset
GT.chld.hsld | 2009 A/H1N1 observed generation time distribution
H1N1.serial.interval | H1N1 serial interval
impute.incid | Impute censored cases to rebuild longer epidemic vector
inspect.data | Audit input data for common issues
integrity.checks | Integrity checks for input parameters
sa.GT | Sensitivity of R0 to varying generation time distributions
sa.time | Sensitivity of R0 to time estimation windows
sensitivity.analysis | Sensitivity analysis of basic reproduction ratio to begin/end dates
sim.epid | Epidemic outbreak simulation
sim.epid.indiv | Influenza-like illness simulation (individual-based model)
smooth.Rt | Smooth real-time reproduction number over larger time periods