Package: QuICSeedR
Title: Analyze Data for Fluorophore-Assisted Seed Amplification Assays
Date: 2024-08-27
Version: 0.1.2
Depends: R (>= 4.1.0)
Authors@R: person(given = "Manci",
                  family = "Li",
                  email = "li000021@umn.edu",
                  role = c("aut", "cre"),
                  comment = c(ORCID = "0000-0003-3930-7117"))
Copyright: Manci Li
Description: A toolkit for analysis and visualization of data from fluorophore-assisted seed amplification assays, such as Real-Time Quaking-Induced Conversion (RT-QuIC) and Fluorophore-Assisted Protein Misfolding Cyclic Amplification (PMCA). 'QuICSeedR' addresses limitations in existing software by automating data processing, supporting large-scale analysis, and enabling comparative studies of analysis methods. It incorporates methods described in Henderson et al. (2015) <doi:10.1099/vir.0.069906-0>, Li et al. (2020) <doi:10.1038/s41598-021-96127-8>, Rowden et al. (2023) <doi:10.3390/pathogens12020309>, Haley et al. (2013) <doi:10.1371/journal.pone.0081488>, and Mair and Wilcox (2020) <doi:10.3758/s13428-019-01246-w>. Please refer to the original publications for details.
Imports: WRS2, magrittr, graphics, stats, ggplot2, methods, dplyr,
        tidyr, tidyselect, rlang, readxl
License: GPL-3 | file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.2
Suggests: testthat (>= 3.0.0)
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2024-08-27 15:09:24 UTC; manci
Author: Manci Li [aut, cre] (<https://orcid.org/0000-0003-3930-7117>)
Maintainer: Manci Li <li000021@umn.edu>
Repository: CRAN
Date/Publication: 2024-09-02 12:20:05 UTC
Built: R 4.6.0; ; 2026-04-26 20:50:25 UTC; unix
