R: Interface to the 'PubChem' Database for Chemical Data Retrieval

# Interface to the 'PubChem' Database for Chemical Data Retrieval

## Documentation for package ‘PubChemR’ version 3.0.0

- DESCRIPTION file

## Help Pages

AIDs | Assay, Compound, and Substance Identifiers
AIDs-SIDs-CIDs | Assay, Compound, and Substance Identifiers
AIDs.PubChemInstance_AIDs | Assay, Compound, and Substance Identifiers
CIDs | Assay, Compound, and Substance Identifiers
CIDs.PubChemInstance_CIDs | Assay, Compound, and Substance Identifiers
download | Download Content from PubChem and Save to a File
get_aids | Retrieve Assay IDs (AIDs) from PubChem
get_all_sources | Retrieve All Sources from PubChem
get_assays | Retrieve Assays from PubChem
get_biological_test_results | Retrieve "Biological Test Results" Section from PubChem Contents
get_cids | Retrieve Compound IDs (CIDs) from PubChem
get_compounds | Retrieve Compounds from PubChem
get_properties | Retrieve Compound Properties from PubChem
get_pug_rest | Retrieve Data from PubChem PUG REST API
get_pug_view | Retrieve PUG View Data from PubChem
get_sdf | Retrieve/Save SDF Data from PubChem
get_sids | Retrieve Substance IDs (SIDs) from PubChem
get_substances | Retrieve Substances from PubChem
get_synonyms | Retrieve Synonyms from PubChem
has_hits | Check Whether Queries Returned Hits
instance | Retrieve Information for Requested Instances
instance.PubChemInstanceList | Retrieve Information for Requested Instances
pc_activity_matrix | Build an Assay Activity Matrix
pc_activity_outcome_map | Harmonize Activity Outcome Labels
pc_assay | Query Assay Records via the Next-Generation API
pc_assay_activity_long | Convert PubChem Assay Summary to Long Activity Table
pc_batch | Batch-Orchestrate PubChem Workflows
pc_benchmark | Benchmark Chunked PubChem Workflows
pc_benchmark_harness | Benchmark Harness for Scale Scenarios
pc_cache_clear | Clear PubChemR Request Cache
pc_cache_info | Cache Diagnostics for PubChemR
pc_capabilities | Inspect Next-Generation Workflow Capabilities
pc_collect | Collect Results From an Async PubChem Query
pc_compound | Query Compound Records via the Next-Generation API
pc_config | Configure PubChemR Next-Gen API Defaults
pc_cross_domain_join | Join Compound, Substance, Assay, and Target Tables
pc_example_assaysummary_payload | Example Assay Summary Payload for Next-Generation Workflows
pc_example_feature_table | Example Feature Table for Next-Generation Modeling Workflows
pc_export_model_data | Export Model-Ready Data
pc_feature_table | Build a Modeling-Ready Feature Table
pc_identifier_map | Map Identifiers via the Next-Generation API
pc_lifecycle_policy | Versioning and Deprecation Policy
pc_model_matrix | Convert Feature Tables to Model Matrix Form
pc_poll | Poll an Asynchronous PubChem ListKey
pc_profile | Apply a Predefined Execution Profile
pc_property | Query Compound Properties via the Next-Generation API
pc_request | Unified Transport Layer for PubChem Requests
pc_response | Normalize an HTTP Response Into a Typed PubChem Result
pc_resume_batch | Resume a Checkpointed Batch Workflow
pc_sdq_bioactivity | Retrieve Full Biological Test Results from PubChem SDQ
pc_similarity_search | Similarity-Driven Identifier Search
pc_submit | Submit an Asynchronous PubChem Query
pc_substance | Query Substance Records via the Next-Generation API
pc_to_chemminer | Convert PubChem Tables to ChemmineR SDF Objects
pc_to_rcdk | Convert PubChem Tables to rcdk Molecules
property_map | Retrieve Compound Properties from PubChem
pubChemData | Retrieve Raw Data from PUG REST Object
pubChemData.PugRestInstance | Retrieve Raw Data from PUG REST Object
PubChemR-classes | 'PubChemInstanceList' and 'PubChemInstance' Classes
PugView-classes | Classes for Pug View Request
request_args | Retrieve Function Inputs
retrieve | Retrieve Information from PubChem Instances
retrieve.PC_Substance | Retrieve Information from PubChem Instances
retrieve.PubChemInstance | Retrieve Information from PubChem Instances
retrieve.PubChemInstanceList | Retrieve Information from PubChem Instances
retrieve.PubChemResult | Retrieve Information from PubChem Instances
retrieve.PugViewInstance | Retrieve Information from PubChem Instances
retrieve.PugViewSection | Retrieve Information from PubChem Instances
section | Extract Sections from Pug View Request
section.PugViewInstance | Extract Sections from Pug View Request
section.PugViewSection | Extract Sections from Pug View Request
section.PugViewSectionList | Extract Sections from Pug View Request
sectionList | List Available Section/Subsections
sectionList.PugViewInstance | List Available Section/Subsections
sectionList.PugViewSection | List Available Section/Subsections
sectionList.PugViewSectionList | List Available Section/Subsections
SIDs | Assay, Compound, and Substance Identifiers
SIDs.PubChemInstance_SIDs | Assay, Compound, and Substance Identifiers
synonyms | Getter function for 'Synonyms'
synonyms.PubChemInstance_Synonyms | Getter function for 'Synonyms'