# Generated by roxygen2: do not edit by hand

export(BuildCtrlErrorRate)
export(DetectPlasmaMutation)
export(MAF_from_BAM)
export(PrepareLibrary)
import(GenomicRanges)
import(VariantAnnotation)
import(ggplot2)
import(grid)
importClassesFrom(S4Vectors,FilterRules)
importClassesFrom(SummarizedExperiment,RangedSummarizedExperiment)
importFrom(Rsamtools,BamFile)
importFrom(Rsamtools,PileupParam)
importFrom(Rsamtools,ScanBamParam)
importFrom(Rsamtools,filterBam)
importFrom(Rsamtools,pileup)
importFrom(Rsamtools,scanBam)
importFrom(Rsamtools,scanBamWhat)
importFrom(graphics,abline)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,text)
importFrom(stats,binom.test)
importFrom(stats,dnorm)
importFrom(stats,integrate)
importFrom(stats,median)
importFrom(stats,pbinom)
importFrom(stats,quantile)
importFrom(utils,data)
importFrom(utils,download.file)
importFrom(utils,read.delim)
importFrom(utils,read.table)
importFrom(utils,unzip)
importFrom(utils,write.table)
importMethodsFrom(SummarizedExperiment,rowRanges)
