Ak
al
Ané
Anolis
Aristide
Baraud
BGHmlraw
BigeMassart
Birgé
bool
cex
chol
cladewise
Cleynen
codecov
Collyer
colorings
computable
costReconstructions
Cov
dat
DDSE
decorrelated
Djump
doi
DV
EB
EDkhi
eigen
EMs
eps
eq
estim
et
fixedroot
gauss
gglasso
Giraud
grplasso
homoplasies
homoplasy
http
Huet
ij
infty
init
initializations
inv
ith
kth
las
Lebarbier
LINselect
lm
ln
Losos
lth
Machado
Macroevolutionary
mahalanobis
Massart
morphometric
Morphometric
nbr
nbranch
nbrReconstructions
nclus
ndaughters
Nedge
Nk
NN
Nnode
npart
ntaxa
Ornstein
orthonormalization
OU
Pagel's
param
params
paramSimu
parsimonyCost
parsimonyNumber
partitionsNumber
pBIC
phylo
PhyloEM
phylogenies
platyrrhine
pnas
pxntaxa
pxp
randroot
Reis
relativeTimes
renormalized
rescale
rescaled
Revell
Rphylopars
rssb
Sankoff
sBM
scalability
scOU
simmap
Simmap
specialCase
StudentOU
sysbio
syy
tcrossprod
th
Uhlenbeck
ultrametric
Ultrametric
ULTRAMETRIC
ultrametry
un
updateDown
UpdateDown
Uyeda
vec
vectorial
Xp
Yp
YY
YZ
Zhat
ZZ
