R: Joint Peak Detection in Several ChIP-Seq Samples

# Joint Peak Detection in Several ChIP-Seq Samples

## Documentation for package ‘PeakSegJoint’ version 2024.12.4

- DESCRIPTION file
- Package NEWS

## Help Pages

binSum | binSum
chr7.peaks | chr7 peaks
clusterPeaks | clusterPeaks
ConvertModelList | ConvertModelList
demo.profiles | Demo profiles
featureMatrixJoint | featureMatrixJoint
GeomTallRect | GeomTallRect
H3K27ac.TDH.MMM4 | Some histone ChIP-seq data
H3K36me3.AM.immune.chunk21 | H3K36me3_AM_immune chunk 21
H3K36me3.TDH.other.chunk1 | H3K36me3 TDH other chunk 1
H3K4me3.PGP.immune.chunk2 | H3K4me3 PGP immune chunk 2
H3K4me3.TDH.other.chunk8 | H3K4me3_TDH_other chunk 8 subset
multiClusterPeaks | multiClusterPeaks
overflow.list | Data set that caused integer overflow
peak.at.profile.end | peak at profile end
peak1.infeasible | data where the PeakSegJoint model with 1 peak is infeasible
PeakErrorSamples | PeakErrorSamples
PeakSegJointError | PeakSegJointError
PeakSegJointFaster | PeakSegJointFaster
PeakSegJointFasterOne | PeakSegJointFasterOne
PeakSegJointHeuristic | PeakSegJointHeuristic
PeakSegJointHeuristicStep1 | PeakSegJointHeuristicStep1
PeakSegJointHeuristicStep2 | PeakSegJointHeuristicStep2
PeakSegJointSeveral | PeakSegJointSeveral
PoissonLoss | PoissonLoss
ProfileList | ProfileList