R: Multiplex Network Analysis

# Multiplex Network Analysis

## Documentation for package ‘PLEXI’ version 1.0.0

- DESCRIPTION file

## Help Pages

as_igraph | Convert plexi graph data to igraph
as_plexi_graph | Convert adjacency matrix to plexi graph data
distance | Function to calculate distance between two vectors
ednn | Encoder decoder neural network (EDNN) function
ednn_io_prepare | Preparing the input and output of the EDNN for a multiplex graph
example_data | Example Data
network_gen | Multiplex Network Generation
plexi_distance_test1_isn | Test the extremeness of embedding distances of local neighbors.
plexi_distance_test_isn | Test the embedding distances of local neighbors change between the two conditions for ISNs.
plexi_embedding | Calculate the embedding space for a multiplex network
plexi_embedding_2layer | Calculate the embedding space for a two layer multiplex network
plexi_node_detection_2layer | Detecting the nodes whose local neighbors change bweteen the two conditions.
plexi_node_distance | Detecting the nodes whose local neighbors change between the two conditions for ISNs.
p_val_count | Calculate p.value for x given set of null values using counts
p_val_norm | Calculate p.value for x given set of null values using a Gaussian null pdf
p_val_rank | Calculate p.value for x given a set of null values using ranks
Rank | Ranking a vector
rep_random_walk | Repetitive Fixed-length (weighted) random walk algorithm
subgraph_difference_plot | Visualization of a difference subgroup using a circular graph
subgraph_plot | Visualization of a subgroup using a circular graph
weightd_random_walk | Weighted Random Walk algorithm