R: Penalised Maximum Likelihood Estimation for Hidden Semi-Markov Models

# Penalised Maximum Likelihood Estimation for Hidden Semi-Markov Models

## Documentation for package ‘PHSMM’ version 1.0

- DESCRIPTION file

## Help Pages

dbern | Bernoulli distribution
decodeHSMM | State decoding
muskox | Muskox movement data
n2wHSMM | Parameter transformation from natural to working parameters
nll_Rcpp | Negative log-likelihood evaluation
npllHSMM | negative penalised HSMM log-likelihood function
pbern | Bernoulli distribution
plotDw | Plot of the estimated HSMM dwell-time distributions.
pmleHSMM | HSMM penalised maximum likelihood estimation
pseudoResHSMM | HSMM pseudo-residuals
tpmHMM | Tranistion probability matrix of the HMM representation
w2nHSMM | Parameter transformation from working to natural parameters