R: Discover Probable Duplicates in Plant Genetic Resources Collections

# Discover Probable Duplicates in Plant Genetic Resources Collections

## Documentation for package ‘PGRdup’ version 0.3.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

AddProbDup | Add probable duplicate sets fields to the PGR passport database
DataClean | Clean PGR passport data
DisProbDup | Get disjoint probable duplicate sets
DoubleMetaphone | 'Double Metaphone' phonetic algorithm
GN1000 | Sample groundnut PGR passport data
KWCounts | Generate keyword counts
KWIC | Create a KWIC index
MergeKW | Merge keyword strings
MergePrefix | Merge keyword strings
MergeProbDup | Merge two objects of class 'ProbDup'
MergeSuffix | Merge keyword strings
ParseProbDup | Parse an object of class 'ProbDup' to a data frame.
print.KWIC | Prints summary of 'KWIC' object.
print.ProbDup | Prints summary of 'ProbDup' object.
ProbDup | Identify probable duplicates of accessions
read.genesys | Convert 'Darwin Core - Germplasm' zip archive to a flat file
ReconstructProbDup | Reconstruct an object of class ProbDup
ReviewProbDup | Retrieve probable duplicate set information from PGR passport database for review
SplitProbDup | Split an object of class 'ProbDup'
ValidatePrimKey | Validate if a data frame column confirms to primary key/ID constraints
ViewProbDup | Visualize the probable duplicate sets retrieved in a 'ProbDup' object