# Generated by roxygen2: do not edit by hand

export(BSPLeaveCenter)
export(MAN)
export(MINetworkPlot_topEdges)
export(PAC)
export(aggregateData)
export(annotateClades)
export(annotationMatrix_withSubpopProp)
export(constellationPlot)
export(fmeasure)
export(getExtraneousCladeSubpopulations)
export(getRepresentativeNetworks)
export(heatmapInput)
export(refineSubpopulationLabels)
export(renamePrunedSubpopulations)
export(runElbowPointAnalysis)
export(samplePass)
import(Rcpp)
import(Rtsne)
import(ggplot2)
import(parmigene)
importFrom(dplyr,"%>%")
importFrom(dplyr,funs)
importFrom(dplyr,group_by)
importFrom(dplyr,summarise_all)
importFrom(ggrepel,geom_text_repel)
importFrom(igraph,graph.adjacency)
importFrom(igraph,igraph_opt)
importFrom(igraph,layout.circle)
importFrom(igraph,simplify)
importFrom(infotheo,discretize)
importFrom(infotheo,mutinformation)
importFrom(stats,kmeans)
importFrom(stats,mahalanobis)
importFrom(utils,combn)
importFrom("grDevices", "dev.off", "png", "rainbow")
importFrom("graphics", "lines", "plot", "title")
importFrom("stats", "as.dist", "complete.cases", "cutree", "dist", "hclust", "loess", "predict", "var")
importFrom("utils", "write.table")
useDynLib(PAC)
