R: Nominating Quality Control Outliers in Genomic Profiling Studies

# Nominating Quality Control Outliers in Genomic Profiling Studies

## Documentation for package ‘OmicsQC’ version 1.1.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS

## Help Pages

accumulate.zscores | Sum across sign corrected z-scores for total sample quality score
correct.zscore.signs | Corrects the z-scores signs according to the metrics
cosine.similarity.cutoff | Calculate an outlier cutoff using cosine similarity
cosine.similarity.iterative | Tests the accumulated quality scores for outliers using cosine similarity
example.qc.dataframe | QC metrics across 100 samples
fit.and.evaluate | Fits the QC data to distributions and returns the KS test result and BIC score
get.qc.barplot | Generates the standard barplot of scores for each sample
get.qc.heatmap | Generates the standard heatmap of scores for each sample.
get.qc.multipanelplot | Generates the multipanel plot of heatmap and barplot
sign.correction | Directionality of QC metrics
ylabels | Formatted QC metrics labels
zscores.from.metrics | Calculate z-scores for each metric across each sample