Package: OSNMTF
Type: Package
Title: Orthogonal Sparse Non-Negative Matrix Tri-Factorization
Version: 0.1.0
Author: Xiaoyao Yin
Maintainer: Xiaoyao Yin <yinxy1992@sina.com>
Description: A novel method to implement cancer subtyping and subtype specific drug targets identification via non-negative matrix tri-factorization.
    To improve the interpretability, we introduce orthogonal constraint to the row coefficient matrix and column coefficient matrix. To meet the prior knowledge
    that each subtype should be strongly associated with few gene sets, we introduce sparsity constraint to the association sub-matrix. The average residue was
    introduced to evaluate the row and column cluster numbers. This is part of the work "Liver Cancer Analysis via Orthogonal Sparse Non-Negative Matrix Tri-
    Factorization" which will be submitted to BBRC.
Imports: dplyr, MASS, stats
Depends: R (>= 3.4.4)
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2019-11-24 12:46:22 UTC; yxy
Repository: CRAN
Date/Publication: 2019-11-28 13:50:02 UTC
Built: R 4.6.0; ; 2026-04-26 14:22:04 UTC; unix
