R: Extract Information from Clinical Reports from 'Oncomine Reporter' and NCBI 'ClinVar'

# Extract Information from Clinical Reports from 'Oncomine Reporter' and NCBI 'ClinVar'

## Documentation for package ‘ORscraper’ version 0.1.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

classify_biopsy | Determine the type of biopsy from identifiers
extract_chip_id | Extract numeric identifiers from file names
extract_fusions | Extract fusion variants from text
extract_intermediate_values | Extract intermediate values from text lines
extract_values_from_tables | Extract values from tables within text
extract_values_start_end | Extract values from start or end patterns
extract_variable | Extract variable value from text lines
filter_pathogenic_only | Filter for pathogenic results only
narrow_text | Extract a subset of text based on start and end patterns
read_pdf_content | Read content from a PDF file
read_pdf_files | Read all PDF files in a directory
search_ncbi_clinvar | Search for pathogenicity information in NCBI ClinVar
search_value | Search for a specific value in text lines