Package: ORscraper
Type: Package
Title: Extract Information from Clinical Reports from 'Oncomine
        Reporter' and NCBI 'ClinVar'
Version: 0.1.1
Authors@R: c(
    person("Samuel", "González", email = "samugonz0204@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0009-0007-9531-9821")),
    person("Antonio Jesus", "Canepa", role = "ctb", comment = c(ORCID = "0000-0002-0608-2743")),
    person("Patricia", "Saiz", role = "ctb", comment = c(ORCID = "0000-0001-7106-5192")),
    person("María", "González", role = "ctb", comment = c(ORCID = "0009-0000-1887-4644"))
  )
Description: Clinical reports generated by 'Oncomine Reporter' software contain
    critical data in unstructured PDF format, making manual extraction
    time-consuming and error-prone. 'ORscraper' provides a coherent suite of
    functions to automate this process, allowing researchers to parse
    reports, identify key biomarkers, extract genetic variant tables,
    and filter results. It also integrates with the NCBI 'ClinVar' API 
    <https://www.ncbi.nlm.nih.gov/clinvar/> to enrich extracted data.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.3
Depends: R (>= 4.0.0)
SystemRequirements: poppler-cpp (>= 0.73)
Imports: pdftools, stringr, readxl, rentrez
Suggests: testthat (>= 3.0.0), rmarkdown, knitr, mockery, spelling
Config/testthat/edition: 3
VignetteBuilder: knitr
URL: https://github.com/SamuelGonzalez0204/ORscraper
BugReports: https://github.com/SamuelGonzalez0204/ORscraper/issues
Language: en-US
NeedsCompilation: no
Packaged: 2026-03-10 20:56:03 UTC; samug
Author: Samuel González [aut, cre] (ORCID:
    <https://orcid.org/0009-0007-9531-9821>),
  Antonio Jesus Canepa [ctb] (ORCID:
    <https://orcid.org/0000-0002-0608-2743>),
  Patricia Saiz [ctb] (ORCID: <https://orcid.org/0000-0001-7106-5192>),
  María González [ctb] (ORCID: <https://orcid.org/0009-0000-1887-4644>)
Maintainer: Samuel González <samugonz0204@gmail.com>
Repository: CRAN
Date/Publication: 2026-03-11 00:20:28 UTC
Built: R 4.6.0; ; 2026-04-26 14:21:54 UTC; unix
