NGCHM-package	NGCHM-package
$.shaidyRepo	cash-.shaidyRepo
+	addition-methods
+,ngchmVersion2,ngchmAxis-method	addition-methods
castAsInteger	castAsInteger
castListAsInteger	castListAsInteger
chmAdd	chmAdd-method
chmAdd,ngchm-method	chmAdd-method
chmAddAxisType	chmAddAxisType-method
chmAddAxisType,ngchm,character,character,character-method	chmAddAxisType-method
chmAddAxisType,ngchm,character,character,missing-method	chmAddAxisType-method
chmAddAxisType,ngchm,character,character,ngchmJS-method	chmAddAxisType-method
chmAddColormap	chmAddColormap-method
chmAddColormap,ngchm,ngchmColormap-method	chmAddColormap-method
chmAddCovariate	chmAddCovariate-method
chmAddCovariate,ngchmDataset,character,ngchmCovariate-method	chmAddCovariate-method
chmAddCovariateBar	chmAddCovariateBar-method
chmAddCovariateBar,ngchm,character,list-method	chmAddCovariateBar-method
chmAddCovariateBar,ngchm,character,ngchmBar-method	chmAddCovariateBar-method
chmAddCovariateBar,ngchm,character,ngchmCovariate-method	chmAddCovariateBar-method
chmAddCovariateBar,ngchm,character,ngchmCovariateBar-method	chmAddCovariateBar-method
chmAddCSS	chmAddCSS-method
chmAddCSS,ngchm,character,character-method	chmAddCSS-method
chmAddCSS,ngchm,character-method	chmAddCSS-method
chmAddDataset	chmAddDataset-method
chmAddDataset,ngchm,ngchmDataset-method	chmAddDataset-method
chmAddDialog	chmAddDialog-method
chmAddDialog,ngchm,ngchmDialog-method	chmAddDialog-method
chmAddLayer	chmAddLayer-method
chmAddLayer,ngchm,matrix-method	chmAddLayer-method
chmAddLayer,ngchm,ngchmLayer-method	chmAddLayer-method
chmAddMenuItem	chmAddMenuItem-method
chmAddMenuItem,ngchm,character,character,character-method	chmAddMenuItem-method
chmAddMenuItem,ngchm,character,character,ngchmJS-method	chmAddMenuItem-method
chmAddMetaData	chmAddMetaData-method
chmAddMetaData,ngchm,character,character,character-method	chmAddMetaData-method
chmAddOverview	chmAddOverview-method
chmAddOverview,ngchm,character,numeric,numeric-method	chmAddOverview-method
chmAddOverview,ngchm,character,optNumeric,optNumeric-method	chmAddOverview-method
chmAddPCA	chmAddPCA
chmAddProperty	chmAddProperty-method
chmAddProperty,ngchm,character,character-method	chmAddProperty-method
chmAddReducedDim	chmAddReducedDim
chmAddRelated	chmAddRelated-method
chmAddRelated,ngchm,character,character,character-method	chmAddRelated-method
chmAddRelatedGroup	chmAddRelatedGroup-method
chmAddRelatedGroup,ngchm,character,character,character,character-method	chmAddRelatedGroup-method
chmAddRelatedGroup,ngchm,character,character,character,missing-method	chmAddRelatedGroup-method
chmAddSpecificAxisTypeFunction	chmAddSpecificAxisTypeFunction-method
chmAddSpecificAxisTypeFunction,ngchm,character,character,character,character-method	chmAddSpecificAxisTypeFunction-method
chmAddSpecificAxisTypeFunction,ngchm,character,character,character,ngchmJS-method	chmAddSpecificAxisTypeFunction-method
chmAddTag	chmAddTag-method
chmAddTag,ngchm,character,character-method	chmAddTag-method
chmAddTag,ngchm,character-method	chmAddTag-method
chmAddTemplate	chmAddTemplate-method
chmAddTemplate,ngchm,charOrFunction,character,optList-method	chmAddTemplate-method
chmAddToolboxR	chmAddToolboxR-method
chmAddToolboxR,ngchm,character,character,character,character-method	chmAddToolboxR-method
chmAddToolboxR2	chmAddToolboxR2-method
chmAddToolboxR2,ngchm,character,character,character-method	chmAddToolboxR2-method
chmAddToolboxRC	chmAddToolboxRC-method
chmAddToolboxRC,ngchm,character,character,character,character-method	chmAddToolboxRC-method
chmAddToolboxRC,ngchm,character,character,character-method	chmAddToolboxRC-method
chmAddTSNE	chmAddTSNE
chmAddUMAP	chmAddUMAP
chmAddUWOT	chmAddUWOT
chmAxis	chmAxis
chmAxisType	chmAxisType
chmBindFunction	chmBindFunction-method
chmBindFunction,character,character,list-method	chmBindFunction-method
chmBindFunction,character,ngchmJS,list-method	chmBindFunction-method
chmBrowse	chmBrowse
chmColOrder<-	chmColOrder-method
chmColOrder<-,ngchm,optDendrogram-method	chmColOrder-method
chmColorMap	chmColorMap
chmColorMap<-	chmColorMap-set
chmColors	chmColors
chmColors<-	chmColors-set
chmCovariate	chmCovariate
chmCovariateBar	chmCovariateBar
chmCreateCollection	chmCreateCollection
chmCreateManagedServer	chmCreateManagedServer
chmCreateServer	chmCreateServer
chmCurrentCollection	chmCurrentCollection
chmCurrentServer	chmCurrentServer
chmDefaultColOrder	chmDefaultColOrder
chmDefaultRowOrder	chmDefaultRowOrder
chmDeployServer	chmDeployServer-method
chmDeployServer,ngchmServer-method	chmDeployServer-method
chmExportToFile	chmExportToFile-method
chmExportToHTML	chmExportToHTML-method
chmExportToPDF	chmExportToPDF-method
chmFieldAccessFunction	chmFieldAccessFunction
chmGetDataset	chmGetDataset-method
chmGetDataset,ngchmLayer-method	chmGetDataset-method
chmGetDeployServerConfig	chmGetDeployServerConfig
chmGetFunction	chmGetFunction
chmGetOverview	chmGetOverview
chmGetProperty	chmGetProperty-method
chmGetProperty,ngchmVersion2,character-method	chmGetProperty-method
chmGetProperty,ngchmVersion2-method	chmGetProperty-method
chmGetTypeInfo	chmGetTypeInfo
chmGetURL	chmGetURL-method
chmGetURL,character-method	chmGetURL-method
chmGetURL,ngchm-method	chmGetURL-method
chmHasProperty	chmHasProperty-method
chmHasProperty,ngchmVersion2,character-method	chmHasProperty-method
chmHasProperty,ngchmVersion2-method	chmHasProperty-method
chmInstall	chmInstall-method
chmInstall,ngchm-method	chmInstall-method
chmLabel	chmLabel
chmLabel<-	chmLabel-set
chmLayer	chmLayer
chmLayer<-	chmLayer-set
chmListFunctions	chmListFunctions
chmListServers	chmListServers
chmListTypes	chmListTypes
chmLoadCHM	chmLoadCHM-method
chmLoadCHM,character,character-method	chmLoadCHM-method
chmLoadCHM,character,missing-method	chmLoadCHM-method
chmLoadCHM,ngchmServer,character-method	chmLoadCHM-method
chmLoadShaidyCHM	chmLoadShaidyCHM
chmMake	chmMake-method
chmMake,ngchm-method	chmMake-method
chmMakePrivate	chmMakePrivate-method
chmMakePrivate,character,character-method	chmMakePrivate-method
chmMakePrivate,character,ngchm-method	chmMakePrivate-method
chmMakePrivate,ngchmServer,character-method	chmMakePrivate-method
chmMakePrivate,ngchmServer,ngchm-method	chmMakePrivate-method
chmMakePublic	chmMakePublic-method
chmMakePublic,character,character-method	chmMakePublic-method
chmMakePublic,character,ngchm-method	chmMakePublic-method
chmMakePublic,ngchmServer,character-method	chmMakePublic-method
chmMakePublic,ngchmServer,ngchm-method	chmMakePublic-method
chmManager	chmManager
chmName	chmName-method
chmName,ngchm-method	chmName-method
chmNew	chmNew
chmNewColorMap	chmNewColorMap
chmNewCovariate	chmNewCovariate
chmNewCovariateBar	chmNewCovariateBar
chmNewDataLayer	chmNewDataLayer
chmNewDataset	chmNewDataset
chmNewDialog	chmNewDialog
chmNewFunction	chmNewFunction
chmNewProperty	chmNewProperty
chmNewServer	chmNewServer
chmOriginalColOrder	chmOriginalColOrder
chmOriginalRowOrder	chmOriginalRowOrder
chmProperties	chmProperties
chmProperty	chmProperty
chmProperty<-	chmProperty-set
chmRandomColOrder	chmRandomColOrder
chmRandomRowOrder	chmRandomRowOrder
chmRegisterAxisFunction	chmRegisterAxisFunction
chmRegisterFunction	chmRegisterFunction
chmRegisterGetMetadataFunction	chmRegisterGetMetadataFunction
chmRegisterMatrixFunction	chmRegisterMatrixFunction
chmRegisterToolboxFunction	chmRegisterToolboxFunction
chmRegisterType	chmRegisterType
chmRegisterTypeMapper	chmRegisterTypeMapper
chmRegisterTypeSplitter	chmRegisterTypeSplitter
chmRowOrder<-	chmRowOrder-method
chmRowOrder<-,ngchm,optDendrogram-method	chmRowOrder-method
chmServer	chmServer
chmSetCollection	chmSetCollection
chmSetCredentials	chmSetCredentials-method
chmSetCredentials,character,character-method	chmSetCredentials-method
chmSetCredentials,ngchmServer,character-method	chmSetCredentials-method
chmSetDeployServerConfig	chmSetDeployServerConfig
chmStringopFunction	chmStringopFunction
chmTreeGaps	chmTreeGaps
chmUninstall	chmUninstall-method
chmUninstall,character-method	chmUninstall-method
chmUninstall,ngchm-method	chmUninstall-method
chmUrlBase	chmUrlBase-method
chmUrlBase,ngchmServer-method	chmUrlBase-method
chmWriteCustomJS	chmWriteCustomJS
getDimensions	getDimensions-method
getDimensions,prcomp	getDimensions-method
getDimensions,Seurat	getDimensions-method
getDimensions,umap	getDimensions-method
getDimensions.default	getDimensions-method
getDimensions.prcomp	getDimensions-method
getDimensions.Seurat	getDimensions-method
getDimensions.umap	getDimensions-method
gitHashObject	gitHashObject
initLogging	initLogging
NGCHM	NGCHM-package
ngchm-class	ngchm-class
NGCHM-functions	NGCHM-functions
NGCHM-initialization	NGCHM-initialization
ngchmAddDatasetBlob	ngchmAddDatasetBlob
ngchmAddMatrixToCollection	ngchmAddMatrixToCollection
ngchmAddObjectToCollection	ngchmAddObjectToCollection
ngchmAxis-class	ngchmAxis-class
ngchmAxisFunction-class	ngchmAxisFunction-class
ngchmAxisType-class	ngchmAxisType-class
ngchmBar-class	ngchmBar-class
ngchmCollectionInCollection	ngchmCollectionInCollection
ngchmCollectionTree	ngchmCollectionTree
ngchmColormap-class	ngchmColormap-class
ngchmCovariate-class	ngchmCovariate-class
ngchmCreateServerProtocol	ngchmCreateServerProtocol
ngchmCSS-class	ngchmCSS-class
ngchmDataset-class	ngchmDataset-class
ngchmDialog-class	ngchmDialog-class
ngchmFindRepo	ngchmFindRepo
ngchmGetDataFileShaid	ngchmGetDataFileShaid
ngchmGetEnv	ngchmGetEnv
ngchmGetHandleHTTR	ngchmGetHandleHTTR
ngchmGetLabels	ngchmGetLabels
ngchmGetLabelsStr	ngchmGetLabelsStr
ngchmGetProtoParam	ngchmGetProtoParam
ngchmGetServerProtocol	ngchmGetServerProtocol
ngchmInitShaidyRepository	ngchmInitShaidyRepository
ngchmJS-class	ngchmJS-class
ngchmLayer-class	ngchmLayer-class
ngchmListServerProtocols	ngchmListServerProtocols
ngchmLoadDatasetBlob	ngchmLoadDatasetBlob
ngchmMakeFormat.original	ngchmMakeFormat.original
ngchmMakeFormat.shaidy	ngchmMakeFormat.shaidy
ngchmMatrixFunction-class	ngchmMatrixFunction-class
ngchmMenuItem-class	ngchmMenuItem-class
ngchmMetaData-class	ngchmMetaData-class
ngchmNewBar	ngchmNewBar
ngchmNewCollection	ngchmNewCollection
ngchmOverview-class	ngchmOverview-class
ngchmProperty-class	ngchmProperty-class
ngchmProtoParamCheck	ngchmProtoParamCheck
ngchmPushSourceRepository	ngchmPushSourceRepository
ngchmPushSourceServer	ngchmPushSourceServer
ngchmPushTempRepository	ngchmPushTempRepository
ngchmRegisterServer	ngchmRegisterServer
ngchmRelated-class	ngchmRelated-class
ngchmRelatedGroup-class	ngchmRelatedGroup-class
ngchmRenderChm	ngchmRenderChm
ngchmResponseJSON	ngchmResponseJSON
ngchmRowCenter	ngchmRowCenter
ngchmSaveAsDatasetBlob	ngchmSaveAsDatasetBlob
ngchmSaveAsDendrogramBlob	ngchmSaveAsDendrogramBlob
ngchmSaveChmAsBlob	ngchmSaveChmAsBlob
ngchmServer-class	ngchmServer-class
ngchmServerProtocol-class	ngchmServerProtocol-class
ngchmTemplate-class	ngchmTemplate-class
ngchmTileDataset	ngchmTileDataset
ngchmTypeMapper-class	ngchmTypeMapper-class
ngchmUnregisterServer	ngchmUnregisterServer
ngchmValueProp-class	ngchmValueProp-class
ngchmVersion2-class	ngchmVersion2-class
optDendrogram-class	optDendrogram-class
plot.ngchmVersion2	plot.ngchmVersion2
print.ngchm.type.info	print.ngchm.type.info
print.shaidyRepo	print.shaidyRepo
shaid-class	shaid-class
shaidyAddFileBlob	shaidyAddFileBlob
shaidyBlobExists	shaidyBlobExists
shaidyCopyBlob	shaidyCopyBlob
shaidyCreateProtoBlob	shaidyCreateProtoBlob
shaidyFinalizeProtoBlob	shaidyFinalizeProtoBlob
shaidyFindRepo	shaidyFindRepo
shaidyGetComponents	shaidyGetComponents-method
shaidyGetComponents,ngchm-method	shaidyGetComponents-method
shaidyGetComponents,ngchmCovariate-method	shaidyGetComponents-method
shaidyGetComponents,ngchmDataset-method	shaidyGetComponents-method
shaidyGetShaid	shaidyGetShaid-method
shaidyGetShaid,ngchm-method	shaidyGetShaid-method
shaidyHashProtoBlob	shaidyHashProtoBlob
shaidyInitRepository	shaidyInitRepository
shaidyLoadProvenanceDB	shaidyLoadProvenanceDB
shaidyLoadProvidDB	shaidyLoadProvidDB
shaidyLoadRepository	shaidyLoadRepository
shaidyNewCache	shaidyNewCache
shaidyProvenance	shaidyProvenance
shaidyRepoAPI	shaidyRepoAPI
treeCuts-class	treeCuts-class
verifyNumeric	verifyNumeric
