# Generated by roxygen2: do not edit by hand

S3method(applyTransform,default)
S3method(applyTransform,matrix)
S3method(applyTransform,mesh3d)
S3method(classify,CVA)
S3method(classify,bgPCA)
S3method(classify,typprob)
S3method(exVar,lm)
S3method(exVar,mvr)
S3method(export,meshDist)
S3method(fixLMmirror,array)
S3method(fixLMmirror,matrix)
S3method(getTrafo4x4,rotonto)
S3method(meshDist,matrix)
S3method(meshDist,mesh3d)
S3method(mirror,matrix)
S3method(mirror,mesh3d)
S3method(mirror2plane,matrix)
S3method(mirror2plane,mesh3d)
S3method(pcAlign,matrix)
S3method(pcAlign,mesh3d)
S3method(pcaplot3d,nosymproc)
S3method(pcaplot3d,symproc)
S3method(plot,ILDSR2)
S3method(plot,slider3d)
S3method(predict,CVA)
S3method(predict,bgPCA)
S3method(print,CVA)
S3method(print,ILDSR2)
S3method(print,bgPCA)
S3method(print,classify)
S3method(print,nosymproc)
S3method(print,pls2B)
S3method(print,symproc)
S3method(print,typprob)
S3method(relaxLM,matrix)
S3method(relaxLM,mesh3d)
S3method(render,matrixDist)
S3method(render,meshDist)
S3method(rotaxis3d,matrix)
S3method(rotaxis3d,mesh3d)
S3method(rotreverse,matrix)
S3method(rotreverse,mesh3d)
S3method(visualise,ILDSR2)
S3method(visualize,ILDSR2)
S3method(warpmovie3d,matrix)
S3method(warpmovie3d,mesh3d)
export(CAC)
export(CVA)
export(CreateL)
export(ILDS)
export(ILDSR2)
export(LPS2RAS)
export(NNshapeReg)
export(PCdist)
export(ProcGPA)
export(RegScore)
export(adnormals)
export(align2procSym)
export(angle.calc)
export(angleTest)
export(anonymize)
export(applyTransform)
export(areaSphere)
export(areaSpherePart)
export(armaGinv)
export(arrMean3)
export(array2list)
export(asymPermute)
export(barycenter)
export(bindArr)
export(bone1)
export(bone2)
export(bone3)
export(cExtract)
export(cSize)
export(checkLM)
export(checkNA)
export(classify)
export(closemeshKD)
export(computeArea)
export(computeTransform)
export(conv2backf)
export(covDist)
export(covPCA)
export(covW)
export(createAtlas)
export(createMissingList)
export(crossProduct)
export(crossp)
export(cutMeshPlane)
export(cutSpace)
export(data2platonic)
export(deform.grid)
export(deformGrid2d)
export(deformGrid3d)
export(equidistantCurve)
export(exVar)
export(export)
export(facenormals)
export(fastKmeans)
export(file2mesh)
export(find.outliers)
export(fixLMmirror)
export(fixLMtps)
export(getFaces)
export(getMeaningfulPCs)
export(getOuterViewpoints)
export(getPCscores)
export(getPCtol)
export(getPLSCommonShape)
export(getPLSfromScores)
export(getPLSscores)
export(getPointAlongOutline)
export(getSides)
export(getTrafo4x4)
export(getTrafoRotaxis)
export(getVisibleVertices)
export(groupPCA)
export(histGroup)
export(icpmat)
export(inscribeEllipse)
export(inscribeEllipseRot)
export(invertFaces)
export(kendalldist)
export(line2plane)
export(lineplot)
export(list2array)
export(mcNNindex)
export(mergeMeshes)
export(mesh2grey)
export(mesh2obj)
export(mesh2ply)
export(meshDist)
export(meshPlaneIntersect)
export(meshcube)
export(meshres)
export(mirror)
export(mirror2plane)
export(name2factor)
export(name2num)
export(obj2mesh)
export(pcAlign)
export(pcaplot3d)
export(permudist)
export(permuvec)
export(placePatch)
export(plotAtlas)
export(plotNormals)
export(pls2B)
export(plsCoVar)
export(plsCoVarCommonShape)
export(ply2mesh)
export(points2plane)
export(prcompfast)
export(predictPLSfromData)
export(predictPLSfromScores)
export(predictRelWarps)
export(predictShape.lm)
export(proc.weight)
export(procAOVsym)
export(procSym)
export(projRead)
export(qqmat)
export(quad2trimesh)
export(r2morphoj)
export(r2morphologika)
export(ray2mesh)
export(read.csv.folder)
export(read.fcsv)
export(read.lmdta)
export(read.mpp)
export(read.pts)
export(read.slicerjson)
export(readLandmarks.csv)
export(readallTPS)
export(regdist)
export(regdist.raw)
export(relWarps)
export(relaxLM)
export(render)
export(resampleCurve)
export(restoreFromPCA)
export(restoreShapes)
export(retroDeform3d)
export(retroDeformMesh)
export(rmUnrefVertex)
export(rmVertex)
export(rotaxis3d)
export(rotaxisMat)
export(rotmesh.onto)
export(rotonmat)
export(rotonto)
export(rotreverse)
export(scalemesh)
export(showPC)
export(skin1)
export(skin2)
export(skin3)
export(skin4)
export(slider2d)
export(slider3d)
export(solutionSpace)
export(sortCurve)
export(symmetrize)
export(tangentPlane)
export(tanplan)
export(tps2d)
export(tps3d)
export(typprob)
export(typprobClass)
export(unrefVertex)
export(updateIndices)
export(updateNormals)
export(vecx)
export(vert2points)
export(virtualMeshScan)
export(visualise)
export(visualize)
export(warp.mesh)
export(warpmovie2d)
export(warpmovie3d)
export(write.fcsv)
export(write.pts)
export(write.slicerjson)
import(doParallel)
import(grDevices)
import(graphics)
import(mclust)
import(methods)
import(stats)
import(utils)
importClassesFrom(Matrix,dgCMatrix)
importClassesFrom(Matrix,dgeMatrix)
importClassesFrom(Matrix,dsCMatrix)
importClassesFrom(Matrix,dtCMatrix)
importClassesFrom(Matrix,sparseMatrix)
importFrom(MASS,cov.rob)
importFrom(Matrix,as.matrix)
importFrom(Matrix,bdiag)
importFrom(Matrix,crossprod)
importFrom(Matrix,diag)
importFrom(Matrix,forceSymmetric)
importFrom(Matrix,solve)
importFrom(Matrix,sparseMatrix)
importFrom(Matrix,t)
importFrom(Matrix,tcrossprod)
importFrom(Rcpp,evalCpp)
importFrom(Rvcg,nverts)
importFrom(Rvcg,vcgClost)
importFrom(Rvcg,vcgClostKD)
importFrom(Rvcg,vcgCreateKDtree)
importFrom(Rvcg,vcgGetEdge)
importFrom(Rvcg,vcgImport)
importFrom(Rvcg,vcgKDtree)
importFrom(Rvcg,vcgObjWrite)
importFrom(Rvcg,vcgPlyWrite)
importFrom(Rvcg,vcgRaySearch)
importFrom(Rvcg,vcgSample)
importFrom(Rvcg,vcgSearchKDtree)
importFrom(Rvcg,vcgSphere)
importFrom(Rvcg,vcgUpdateNormals)
importFrom(bezier,bezier)
importFrom(colorRamps,blue2green2red)
importFrom(foreach,'%do%')
importFrom(foreach,'%dopar%')
importFrom(foreach,foreach)
importFrom(foreach,registerDoSEQ)
importFrom(jsonlite,read_json)
importFrom(jsonlite,write_json)
importFrom(parallel,clusterExport)
importFrom(parallel,detectCores)
importFrom(parallel,makeCluster)
importFrom(parallel,mclapply)
importFrom(parallel,stopCluster)
importFrom(rgl,bg3d)
importFrom(rgl,clear3d)
importFrom(rgl,close3d)
importFrom(rgl,cur3d)
importFrom(rgl,lines3d)
importFrom(rgl,open3d)
importFrom(rgl,points3d)
importFrom(rgl,pop3d)
importFrom(rgl,rgl.bringtotop)
importFrom(rgl,rgl.snapshot)
importFrom(rgl,rotationMatrix)
importFrom(rgl,shade3d)
importFrom(rgl,spheres3d)
importFrom(rgl,text3d)
importFrom(rgl,translate3d)
importFrom(rgl,wire3d)
useDynLib(Morpho, .registration = TRUE)
