R: Microbiome Regression-Based Kernel Association Tests

# Microbiome Regression-Based Kernel Association Tests

## Documentation for package ‘MiRKAT’ version 1.2.3

- DESCRIPTION file
- User guides, package vignettes and other documentation

## Help Pages

bindata | Simulated DEPENDENT data with BINOMIAL traits for correlated regression-based analysis (i.e. CSKAT, GLMMMiRKAT)
CSKAT | Small-sample SKAT for correlated (continuous) data ('c' stands for 'correlated'). Called within GLMM-MiRKAT.
D2K | D2K
GLMMMiRKAT | The Microbiome Regression-based Kernel Association Test Based on the Generalized Linear Mixed Model
inner.CSKAT | Inner Function for CSKAT, Correlated Sequence Kernel Association Test
inner.KRV | Kernel RV Coefficient Test; Inner Function
KRV | Kernel RV Coefficient Test (KRV)
MiRKAT | Microbiome Regression-based Kernel Association Test
MiRKAT.iQ | MiRKAT-iQ
MiRKAT.Q | Robust MiRKAT (quantile regression)
MiRKAT.R | Robust MiRKAT (robust regression)
MiRKATS | Microiome Regression-based Kernel Association Test for Survival
MiRKAT_binary | Microbiome Regression-Based Kernel Association Test for binary outcomes
MiRKAT_continuous | Microbiome Regression-based Analysis Test for a continuous outcome variable
MMiRKAT | Multivariate Microbiome Regression-based Kernel Association Test
nordata | Simulated DEPENDENT data with GAUSSIAN traits for correlated regression-based analysis (i.e. CSKAT, GLMMMiRKAT)
poisdata | Simulated DEPENDENT data with POISSON (count) traits for correlated regression-based analysis (i.e. CSKAT, GLMMMiRKAT)
throat.meta | Simulated metadata for microbiome regression-based analysis
throat.otu.tab | Simulated OTU data for microbiome regression analysis
throat.tree | Simulated rooted phylogenetic tree