# Generated by roxygen2: do not edit by hand

S3method(boxplot,Data)
S3method(plot,Data)
S3method(plot,Fleet)
S3method(plot,Hist)
S3method(plot,Imp)
S3method(plot,MMSE)
S3method(plot,MSE)
S3method(plot,OM)
S3method(plot,Obs)
S3method(plot,Stock)
S3method(plot,character)
S3method(plot,pars)
S3method(predict,Rel)
S3method(print,Rel)
S3method(print,multiHist)
S3method(simulate,Rel)
export(AAVE)
export(AAVY)
export(ASAP2Data)
export(ASAP2OM)
export(Assess2MOM)
export(Assess2OM)
export(Awatea2OM)
export(BAM2MOM)
export(CALsimp)
export(COSEWIC_Blow)
export(COSEWIC_Dplot)
export(COSEWIC_Hplot)
export(COSEWIC_Pplot)
export(COSEWIC_report)
export(COSEWIC_tab)
export(COSEWIC_tab_formatted)
export(CSRA)
export(CalcAsymptoticDist)
export(Can)
export(Cant)
export(CheckOM)
export(ChkYrs)
export(ChooseEffort)
export(ChooseM)
export(ChooseSelect)
export(Converge)
export(Cos_thresh_tab)
export(Cplot)
export(DFO_bar)
export(DFO_hist)
export(DFO_plot)
export(DFO_plot2)
export(DFO_proj)
export(DFO_quant)
export(DFO_report)
export(DFO_spider)
export(DFO_tab)
export(DFO_tab_formatted)
export(DLMDataDir)
export(DLMdiag)
export(Data2csv)
export(DataDir)
export(DataInit)
export(Data_xl)
export(Dom)
export(Emp)
export(FMSYref)
export(FMSYref50)
export(FMSYref75)
export(Fease)
export(Input)
export(Kplot)
export(LH2OM)
export(LTY)
export(Lag_Data)
export(ML2D)
export(MOM_agg_fleets)
export(MPtype)
export(MPurl)
export(MSEextra)
export(NAor0)
export(NFref)
export(NOAA_plot)
export(NOAA_plot2)
export(Needed)
export(OMdoc)
export(OMexample)
export(OMinit)
export(OneRep)
export(P10)
export(P100)
export(P50)
export(PGK)
export(PMLimit)
export(PMObj)
export(PNOF)
export(PWhisker)
export(Pplot)
export(Pplot2)
export(Project)
export(ProjectMOM)
export(R0conv)
export(RealFease)
export(Replace)
export(Report)
export(Required)
export(SRalphaconv)
export(SRbetaconv)
export(SS2Data)
export(SS2DataMOM)
export(SS2MOM)
export(SS2OM)
export(SSBrefplot)
export(SSMOM2OM)
export(STY)
export(SampleCpars)
export(SampleFleetPars)
export(SampleImpPars)
export(SampleObsPars)
export(SampleStockPars)
export(Sense)
export(Simulate)
export(SimulateMOM)
export(SketchFun)
export(Splot)
export(Sub)
export(SubCpars)
export(SubOM)
export(TAC)
export(TACfilter)
export(Thresh_tab)
export(Tplot)
export(Tplot2)
export(Tplot3)
export(TradePlot)
export(Turing)
export(TuringMOM)
export(Uses)
export(VOI)
export(VOI2)
export(VOIplot)
export(VPA2OM)
export(WHAM2OM)
export(XL2Data)
export(XL2Fleet)
export(XL2OM)
export(XL2Stock)
export(Yield)
export(addMMPs)
export(addMPs)
export(alphaconv)
export(applyMP)
export(avail)
export(betaconv)
export(calcMean)
export(calcProb)
export(checkMSE)
export(curEref)
export(cv)
export(derive_beta_par)
export(doHCR)
export(doIfreq)
export(doRec)
export(fetch.file.names)
export(getmov2)
export(getnIVs)
export(getsel)
export(hconv)
export(hist2)
export(iSCAM2Data)
export(iSCAM2OM)
export(iSCAMcomps)
export(iSCAMinds)
export(joinData)
export(joinHist)
export(joinMSE)
export(join_plots)
export(load.iscam.files)
export(makeMOM)
export(makeRel)
export(makeTransparent)
export(makemov)
export(makemov2)
export(mconv)
export(movestockCPP)
export(movfit_Rcpp)
export(multiDataS)
export(multiMSE)
export(multidebug)
export(optCPU)
export(optMSY_eq)
export(plotFun)
export(plotOFL)
export(plotRel)
export(plot_SS2MOM)
export(plot_SS2OM)
export(plot_mov)
export(plotmulti)
export(plotquant)
export(predictLH)
export(quantile_plot)
export(read.control.file)
export(read.data.file)
export(read.mcmc)
export(read.par.file)
export(read.projection.file)
export(read.report.file)
export(replic8)
export(runCOSEWIC)
export(runInMP)
export(runMP)
export(runMSE)
export(sample_steepness2)
export(sdconv)
export(select_MP)
export(setup)
export(simmov)
export(simmov2)
export(smoothy)
export(tdlnorm)
export(tinyErr)
export(trlnorm)
export(tune_MP)
export(updateMSE)
export(validcpars)
export(wormplot)
exportClasses(Data)
exportClasses(Fleet)
exportClasses(Imp)
exportClasses(MMSE)
exportClasses(MOM)
exportClasses(OM)
exportClasses(Obs)
exportClasses(Stock)
exportClasses(char.log)
exportClasses(label.class)
exportClasses(prob.class)
exportMethods(SubCpars)
exportMethods(plot)
exportMethods(show)
exportMethods(summary)
exportMethods(tinyErr)
importFrom(Rcpp,evalCpp)
importFrom(abind,abind)
importFrom(dplyr,"%>%")
importFrom(dplyr,all_of)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,pull)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,summarize)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,expand_limits)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_rect)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggplotGrob)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,xlab)
importFrom(ggplot2,xlim)
importFrom(ggplot2,ylab)
importFrom(ggplot2,ylim)
importFrom(grDevices,col2rgb)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.new)
importFrom(grDevices,dev.off)
importFrom(grDevices,gray)
importFrom(grDevices,jpeg)
importFrom(grDevices,png)
importFrom(grDevices,rainbow)
importFrom(grDevices,rgb)
importFrom(grDevices,xy.coords)
importFrom(graphics,abline)
importFrom(graphics,arrows)
importFrom(graphics,axTicks)
importFrom(graphics,axis)
importFrom(graphics,barplot)
importFrom(graphics,boxplot)
importFrom(graphics,contour)
importFrom(graphics,grid)
importFrom(graphics,hist)
importFrom(graphics,identify)
importFrom(graphics,layout)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,matplot)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,plot.new)
importFrom(graphics,points)
importFrom(graphics,polygon)
importFrom(graphics,segments)
importFrom(graphics,text)
importFrom(graphics,title)
importFrom(grid,grid.draw)
importFrom(grid,grid.newpage)
importFrom(grid,unit)
importFrom(grid,unit.c)
importFrom(methods,"slot<-")
importFrom(methods,.hasSlot)
importFrom(methods,formalArgs)
importFrom(methods,getClassDef)
importFrom(methods,getSlots)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,show)
importFrom(methods,slot)
importFrom(methods,slotNames)
importFrom(parallel,detectCores)
importFrom(snowfall,sfClusterEval)
importFrom(snowfall,sfExport)
importFrom(snowfall,sfExportAll)
importFrom(snowfall,sfInit)
importFrom(snowfall,sfIsRunning)
importFrom(snowfall,sfLibrary)
importFrom(snowfall,sfSapply)
importFrom(stats,SSasympOff)
importFrom(stats,acf)
importFrom(stats,aggregate)
importFrom(stats,approx)
importFrom(stats,coef)
importFrom(stats,cor)
importFrom(stats,dbeta)
importFrom(stats,density)
importFrom(stats,dlnorm)
importFrom(stats,dnorm)
importFrom(stats,lm)
importFrom(stats,loess)
importFrom(stats,loess.smooth)
importFrom(stats,median)
importFrom(stats,na.pass)
importFrom(stats,nlm)
importFrom(stats,nlminb)
importFrom(stats,nls)
importFrom(stats,optim)
importFrom(stats,optimise)
importFrom(stats,optimize)
importFrom(stats,plogis)
importFrom(stats,pnorm)
importFrom(stats,predict)
importFrom(stats,qlnorm)
importFrom(stats,qnorm)
importFrom(stats,quantile)
importFrom(stats,rbeta)
importFrom(stats,rlnorm)
importFrom(stats,rmultinom)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,simulate)
importFrom(stats,weighted.mean)
importFrom(stats,window)
importFrom(utils,browseURL)
importFrom(utils,capture.output)
importFrom(utils,combn)
importFrom(utils,find)
importFrom(utils,flush.console)
importFrom(utils,ls.str)
importFrom(utils,lsf.str)
importFrom(utils,packageVersion)
importFrom(utils,read.csv)
importFrom(utils,read.csv2)
importFrom(utils,setTxtProgressBar)
importFrom(utils,str)
importFrom(utils,txtProgressBar)
useDynLib(MSEtool)
