Package: MLML2R
Type: Package
Title: Maximum Likelihood Estimation of DNA Methylation and
        Hydroxymethylation Proportions
Version: 0.3.3
Author: Samara Kiihl [aut, cre],
  Maria Jose Martinez-Garrido [aut],
  Arce Domingo-Relloso [aut],
  Jose Bermudez [aut],
  Maria Tellez-Plaza [aut]
Maintainer: Samara Kiihl <samara@ime.unicamp.br>
Description: Maximum likelihood estimates (MLE) of the proportions
    of 5-mC and 5-hmC in the DNA using information from BS-conversion,
    TAB-conversion, and oxBS-conversion methods. One can use information from all three methods 
    or any combination of two of them. Estimates are based on Binomial model by
    Qu et al. (2013) <doi:10.1093/bioinformatics/btt459> and
    Kiihl et al. (2019) <doi:10.1515/sagmb-2018-0031>.
License: MIT + file LICENSE
Encoding: UTF-8
VignetteBuilder: knitr
LazyData: true
biocViews: Software, MethylationArray, Epigenetics, DNAMethylation,
        Microarray, TwoChannel, OneChannel
RoxygenNote: 6.1.1
URL: https://github.com/samarafk/MLML2R
Suggests: minfi, microbenchmark, GEOquery, knitr, rmarkdown,
        IlluminaHumanMethylation450kmanifest
BugReports: https://github.com/samarafk/MLML2R/issues
NeedsCompilation: no
Packaged: 2019-10-17 10:14:34 UTC; sfk
Repository: CRAN
Date/Publication: 2019-10-17 19:30:02 UTC
Built: R 4.6.0; ; 2026-04-25 20:28:57 UTC; unix
