R: Data Wrangling for Antimicrobial Resistance Studies

# Data Wrangling for Antimicrobial Resistance Studies

## Documentation for package ‘MIMER’ version 1.0.6

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

add_events | Add a column and check any previous events identified for a particular antibiotic
check_previous_events | Add a column and check any previous events identified for a particular antibiotic
cleanse_urine_organism_names | Cleanse organism names in Urine samples
clean_antibiotics | Clean Antibiotics using Fuzzy Matching with AMR Packages's Antibiotics Data.
convert_all_directory_files_as_csv | Convert All Directory Files to CSV - To be used in the Manual Build Process
download_ndc_files_as_csv | Download and Convert NDC Files to CSV - To be used in the Manual Build Process
duplicated_microbioevents_records | Transpose microbiology events dataset
is_systemic_route | Check 'route' is systemic or not
ndc_is_antimicrobial | Check 'ndc' code is belongs to any Antimicrobial.
ndc_to_antimicrobial | Convert 'ndc' code to corresponding Antibiotic code.
remove_files | Remove Files - To be used in the Manual Build Process
transpose_microbioevents | Transpose microbiology events dataset