KinMix                  Create a DNA mixture model, with possibly
                        related contributors
KinMixLite-package      Inference About Relationships from DNA Mixtures
add.child.meiosis.nodes
                        Replace CPTs for mixture contributor a Father,
                        given Child genotype, by MBN method
add.motherchild.likd.node
                        Replace CPTs for mixture contributor a Father,
                        given Child and Mother genotypes, by ALN method
add.relative.likd.node
                        Replace CPTs for mixture contributor a Father,
                        given Child genotype, by ALN method
as.gt                   Extract genotype profile for a single
                        contributor from rGTs output
checkdata               Check data for absences of markers or allele
                        values
checkpeaks              Check and modify database to have positive
                        frequencies for all observed peaks/alleles
convertIBD              Convert relationship information to IBD pattern
                        distribution
delete.DQnodes          Delete D and Q dummy nodes from all Bayes nets
                        in mixture
emperors                IBD pattern distribution in the Iulius-Claudius
                        pedigree
expr.make.findings      Coding additional findings as expression
formats                 Formats
gt2aca                  Converts genotype profiles to allele count
                        arrays
intoMix                 Edit output from rGTs to omit individuals with
                        NA amounts of DNA
logL.UKX                Evaluates mixture log likelihood for unknown
                        contributors with extra findings
logLX                   Evaluates mixture log likelihood when extra
                        findings present
logLm                   Log likelihood for mixture model, by marker
loop.rpt.IBD            Analysis of DNA mixtures with familial
                        relationships by looping
make.profile            Convert genotype profile to reference profile
                        format
mixMLX                  Maximises mixture likelihood when extra
                        findings present
pedigreeIBD             Construct IBD pattern distribution from
                        pedigree
plot.IBD                Plot IBD patterns and pattern distributions
protected               Catch numerical errors, and return -Inf
protected.mixML         Protect against numerical errors in maximum
                        likelihood computation
rGTs                    Simulate random genotype profiles and DNA
                        samples for related individuals
require.compiled        Force compilation of all BNs in a DNA mixture
                        model
rni                     Random number initialiser supporting
                        spontaneous replication
rpt.AMEL                Replace CPTs for AMEL marker in a DNA mixture
rpt.IBD                 Replacing CPTs for selected mixture
                        contributors with familial relationships
rpt.UAF                 Replace CPTs in a DNA mixture to model
                        uncertain allele frequencies
size                    Calculate and display total size of BN tables
                        for a DNA mixture
test2data               Small data set for demonstrating some
                        capabilities of KinMix and KinMixLite
wlr                     Computes paternity LR using WLR method
