Package: ImmuneSigR
Title: Immune Cell Signature Retrieval and Single-Cell Scoring
Version: 0.1.0
Authors@R: c(
    person("Yingyan", "Liang", , "liangyingyan0625@163.com", role = c("aut", "cre")),
    person("Peng", "Luo", email = "luopeng@smu.edu.cn", role = "aut")
  )
Description: Provides a literature-derived database of immune cell markers
    formatted as Gene Matrix Transposed (GMT) files. Users can search immune
    cell signatures, retrieve marker lists, export GMT files, create custom
    marker sets, and score gene-by-cell expression matrices with dependency-free
    rank-based or mean-expression methods. Cell subpopulations are distinguished 
    by their source PMIDs. For the core curation of the lung cell atlas, 
    see Travaglini et al. (2020) <doi:10.1038/s41586-020-2922-4>. For the 
    pan-cancer B cell signatures, see Fitzsimons et al. (2024) 
    <doi:10.1016/j.ccell.2024.09.011>.
License: GPL-3
Encoding: UTF-8
Config/roxygen2/version: 8.0.0
NeedsCompilation: no
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
URL: https://github.com/YingYanLaing/ImmuneSigR
BugReports: https://github.com/YingYanLaing/ImmuneSigR/issues
Packaged: 2026-05-14 15:17:11 UTC; 梁颖妍
Author: Yingyan Liang [aut, cre],
  Peng Luo [aut]
Maintainer: Yingyan Liang <liangyingyan0625@163.com>
Repository: CRAN
Date/Publication: 2026-05-19 09:00:06 UTC
Built: R 4.6.0; ; 2026-05-19 11:14:45 UTC; unix
