R: Non-Negative Matrix Factorization for Single-Cell Omics

# Non-Negative Matrix Factorization for Single-Cell Omics

## Documentation for package ‘GeneNMF’ version 0.9.2

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

dropMetaPrograms | Drop meta-programs
findVariableFeatures_wfilters | Find variable features
getDataMatrix | Extract data matrix from Seurat object
getMetaPrograms | Extract consensus gene programs (meta-programs)
getNMFgenes | Get list of genes for each NMF program
multiNMF | Run NMF on a list of Seurat objects
multiPCA | Run PCA on a list of Seurat objects
plotMetaPrograms | Visualizations for meta-programs
runGSEA | Run Gene set enrichment analysis
runNMF | Compute NMF as a low-dim embedding for Seurat
sampleObj | Sample dataset to test GeneNMF installation