B_mats                  A set of 10 trios of B matrices for
                        experimenting with the methods of 'GeRnika'
B_to_phylotree          Create a 'Phylotree' object from a 'B' matrix.
Phylotree-class         S4 class to represent phylogenetic trees.
add_noise               Add noise to the VAF values in an F matrix
combine_trees           Get consensus tree between two phylogenetic
                        trees
create_B                Create tumor phylogenetic tree topology
create_F                Calculate the variant allele frequency (VAF)
                        values in a set of samples
create_U                Calculate tumor clone frequencies in samples
create_instance         Create a tumor phylogenetic tree instance
create_phylotree        Create a 'Phylotree' object
equals                  Check if two phylogenetic trees are equal
find_common_subtrees    Find the set of common subtrees between two
                        phylogenetic trees
palettes                Palettes for the methods of 'GeRnika'
plot                    Plot a Phylotree object.
plot_proportions        Plot a phylogenetic tree with proportional node
                        sizes and colors
