R: Graphical Visualizations Related to Genomic Prediction

# Graphical Visualizations Related to Genomic Prediction

## Documentation for package ‘GPflexViz’ version 1.0.0

- DESCRIPTION file

## Help Pages

example_data1 | gwas_data with all chromosome information This contains Single nucleotide polymorphism (SNP) information.
example_data10 | regression_data This contains estimation and p value data from a/the regression summary output/s.
example_data11 | CI_data This contains individual level data for constructing confidence intervals
example_data2 | gwas_data with partial chromosome information This contains Single nucleotide polymorphism (SNP) information.
example_data3 | accuracy_data with full information This contains prediction accuracy related information.
example_data4 | accuracy_data with partial information This contains prediction accuracy related information.
example_data5 | comparison_data This contains prediction accuracy related information for model comparison.
example_data6 | accuracy_diff_data This contains prediction accuracy related information for detailed model comparison (2 methods at a time).
example_data7 | ld_data This contains Linkage Disequilibrium (LD) related data (e.g. pair-wise variant correlation squared).
example_data8 | distribution_data This contains data for consruction of histograms/density plots, with at least 1 column.
example_data9 | correlation_matrix A 20x20 symmetric matrix containing correlation coefficients between various variables (e.g. varients, individuals).
flex_accuracy | flex_accuracy function
flex_accuracy_diff | flex_accuracy_diff function
flex_accuracy_diff2 | flex_accuracy_diff2 function
flex_boxplot | flex_boxplot function
flex_correlation_plot | flex_correlation_plot function
flex_distribution | flex_distribution function
flex_interval | flex_interval function
flex_LD_decay | flex_LD_decay function
flex_manhattan | flex_manhattan function
flex_qqplot | flex_qqplot function
flex_regression_summary | flex_regression_summary function