Package: EpiSignalDetection
Type: Package
Title: Signal Detection Analysis
Version: 0.1.3
Date: 2026-02-20
Authors@R: c( 
  person( given = "Lore", family = "Merdrignac", 
          role = c("aut", "ctr", "cre"), email = "l.merdrignac@epiconcept.fr", comment = "Author of the package and original code"),
  person( given = "Joana", family = "Gomes Dias", 
          role = c("aut", "fnd"), email = "joana.gomes.dias@ecdc.europa.eu", comment = "Project manager"),
  person( given = "Esther", family = "Kissling", 
          role = c("aut", "ctr"), email = "e.kissling@epiconcept.fr"),
  person( given = "Tommi", family = "Karki", 
          role = c("aut", "fnd"), email = "tommi.karki@ecdc.europa.eu"),
  person( given = "Margot", family = "Einoder-Moreno", 
          role = c("ctb", "fnd"), email = "margot.einoder-moreno@ecdc.europa.eu")) 
Description: Exploring time series for signal detection. It is specifically designed
    to detect possible outbreaks using infectious disease surveillance data
    at the European Union / European Economic Area or country level.
    Automatic detection tools used are presented in the paper
    "Monitoring count time series in R: aberration detection in public health surveillance",
    by Salmon (2016) <doi:10.18637/jss.v070.i10>.
    The package includes:
    - Signal Detection tool, an interactive 'shiny' application
      in which the user can import external data and perform basic signal detection analyses;
    - An automated report in HTML format, presenting the results of the time series analysis in tables and graphs.
      This report can also be stratified by population characteristics (see 'Population' variable).
    This project was funded by the European Centre for Disease Prevention and Control.
Depends: R (>= 3.4.0)
License: EUPL
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.3
Imports: dplyr, graphics, ISOweek, rmarkdown, shiny, surveillance,
        utils
Suggests: DT, ggplot2, knitr (>= 1.20), pander
VignetteBuilder: knitr
SystemRequirements: pandoc (>= 1.12.3)
URL: https://github.com/EU-ECDC/EpiSignalDetection
NeedsCompilation: no
Packaged: 2026-03-03 13:42:31 UTC; l.merdrignac
Author: Lore Merdrignac [aut, ctr, cre] (Author of the package and original
    code),
  Joana Gomes Dias [aut, fnd] (Project manager),
  Esther Kissling [aut, ctr],
  Tommi Karki [aut, fnd],
  Margot Einoder-Moreno [ctb, fnd]
Maintainer: Lore Merdrignac <l.merdrignac@epiconcept.fr>
Repository: CRAN
Date/Publication: 2026-03-03 14:40:02 UTC
Built: R 4.6.0; ; 2026-04-26 12:55:02 UTC; unix
