EpiModel-package        Mathematical Modeling of Infectious Disease
                        Dynamics
InitErgmTerm.absdiffby
                        Definition for absdiffby ERGM Term
InitErgmTerm.absdiffnodemix
                        Definition for absdiffnodemix ERGM Term
InitErgmTerm.fuzzynodematch
                        Definition for fuzzynodematch ERGM Term
add_vertices            Fast Version of network::add.vertices for
                        Edgelist-formatted Network
apportion_lr            Apportion Using the Largest Remainder Method
arrive_nodes            Arrive New Nodes to the netsim_dat Object
as.data.frame.dcm       Extract Model Data for Deterministic
                        Compartmental Models
as.data.frame.icm       Extract Model Data for Stochastic Models
as.data.frame.netdx     Extract Timed Edgelists for netdx Objects
as.epi.data.frame       Validate and Convert to epi.data.frame
as.network.transmat     Convert transmat Infection Tree into a network
                        Object
as.phylo.transmat       Convert transmat Infection Tree into a phylo
                        Object
as_cumulative_edgelist
                        Convert an object to a 'cumulative_edgelist'
as_tibble_edgelist      Convert an Edgelist into a Tibble
check_degdist_bal       Check Degree Distribution for Balance in Target
                        Statistics
color_tea               Create a TEA Variable for Infection Status for
                        'ndtv' Animations
comp_plot               Plot Compartment Diagram for Epidemic Models
control.dcm             Control Settings for Deterministic
                        Compartmental Models
control.icm             Control Settings for Stochastic Individual
                        Contact Models
control.net             Control Settings for Stochastic Network Models
create_dat_object       Create a Minimal netsim_dat Main List Object
                        for a Network Model
create_scenario_list    Make a list of EpiModel scenarios from a
                        data.frame of scenarios
dcm                     Deterministic Compartmental Models
dedup_cumulative_edgelist
                        Deduplicate a cumulative edgelist by combining
                        overlapping edges
delete_edges            Remove Edges That Include Specified Vertices
delete_vertices         Fast Version of network::delete.vertices for
                        Edgelist-formatted Network
depart_nodes            Depart Nodes from the netsim_dat Object
dissolution_coefs       Dissolution Coefficients for Stochastic Network
                        Models
edgelist_censor         Table of Edge Censoring
epiweb                  EpiModel Web
generate_random_params
                        Generate Values for Random Parameters
geom_bands              ggplot2 Geom for Quantile Bands
get_adj_list            Returns an adjacency list from an edge list
get_attr_history        Extract the Attributes History from Network
                        Simulations
get_connected_nodes     Returns all the node connected directly or
                        indirectly to a set of nodes
get_cumulative_degree   Return the Cumulative Degree of a Set of Index
                        Nodes
get_cumulative_edgelist
                        Get a Cumulative Edgelist From a Specified
                        Network
get_cumulative_edgelists_df
                        Get the Cumulative Edgelists of a Model
get_current_timestep    Return the Current Timestep
get_degree              Get Individual Degree from Network or Edgelist
get_edgelist            Get an Edgelist From the Specified Network
get_edgelists_df        Get the Edgelist(s) from the Specified
                        Network(s)
get_formula_term_attr   Output ERGM Formula Attributes into a Character
                        Vector
get_network             Extract Network Objects from Network
                        Simulations
get_network_attributes
                        Get Network Attributes from a Network Object
get_network_term_attr   Output Network Attributes into a Character
                        Vector
get_nwstats             Extract Network Statistics from netsim or netdx
                        Object
get_param_set           Extract the Parameter Set from Network
                        Simulations
get_partners            Return the Historical Contacts (Partners) of a
                        Set of Index Nodes
get_sims                Extract Network Simulations
get_subnet_adj_list     Return an adjacency list of subnets
get_vertex_attribute    Get Vertex Attribute on Network Object
icm                     Stochastic Individual Contact Models
increment_timestep      Increment the Current Timestep
init.dcm                Initial Conditions for Deterministic
                        Compartmental Models
init.icm                Initial Conditions for Stochastic Individual
                        Contact Models
init.net                Initial Conditions for Stochastic Network
                        Models
is.transmat             Extract Transmissions Matrix from Network
                        Epidemic Model
is_active_posit_ids     Are These Nodes Active (Positional IDs)
is_active_unique_ids    Are These Nodes Active (Unique IDs)
make_restart_point      Make a Lightweight Restart Point From a
                        'netsim' Object with tergmLite
merge.icm               Merge Data across Stochastic Individual Contact
                        Model Simulations
merge.netsim            Merge Model Simulations across netsim Objects
modules.icm             Modules for Stochastic Individual Contact
                        Models
modules.net             Modules for Stochastic Network Models
multilayer              Specify Controls by Network
mutate_epi              Add New Epidemiology Variables
net-accessor            Functions to Access and Edit the Main
                        netsim_dat Object in Network Models
netdx                   Dynamic Network Model Diagnostics
netest                  Dynamic Network Model Estimation
netsim                  Stochastic Network Models
network_initialize      Initialize Network Object
nwupdate.net            Dynamic Network Updates
overwrite_attrs         Helper to use a 'data.frame' to initialize some
                        attributes
padded_vector           Grow a Vector to a Given Size, Padding it With
                        Empty Elements
param.dcm               Epidemic Parameters for Deterministic
                        Compartmental Models
param.icm               Epidemic Parameters for Stochastic Individual
                        Contact Models
param.net               Epidemic Parameters for Stochastic Network
                        Models
param.net_from_table    Parameters List for Stochastic Network Models
                        from a Formatted Data Frame
param.net_to_table      Coerce a list of parameters to a
                        'long.param.df'
param_random            Create a Value Sampler for Random Parameters
plot.dcm                Plot Data from a Deterministic Compartmental
                        Epidemic Model
plot.epi.data.frame     Plot Epidemic Model Results From a Netsim
                        Data.Frame
plot.icm                Plot Data from a Stochastic Individual Contact
                        Epidemic Model
plot.netdx              Plot Dynamic Network Model Diagnostics
plot.netsim             Plot Data from a Stochastic Network Epidemic
                        Model
plot.transmat           Plot transmat Infection Tree in Three Styles
print.dcm               Print Method for DCM Objects
print.icm               Print Method for ICM Objects
print.netdx             Utility Function for Printing netdx Object
print.netsim            Print Method for Network Model Simulations
reachable-nodes         Get the Forward or Backward Reachable Nodes for
                        a Set of Nodes
record_attr_history     Record Attribute History
record_raw_object       Record an Arbitrary Object During a Simulation
set_current_timestep    Set the Current Timestep
set_transmat            Save Transmission Matrix
set_vertex_attribute    Set Vertex Attribute on Network Object
summary.dcm             Summary Model Statistics
summary.icm             Summary Model Statistics
summary.netsim          Summary Model Statistics
trim_netest             Function to Reduce the Size of a 'netest'
                        Object
truncate_sim            Truncate Simulation Time Series
unique_id-tools         Convert Unique Identifiers to/from Positional
                        Identifiers
update_cumulative_edgelist
                        Update a Cumulative Edgelist of the Specified
                        Network
update_dissolution      Adjust Dissolution Component of Network Model
                        Fit
update_params           Update Model Parameters for Stochastic Network
                        Models
use_scenario            Apply a scenario object to a param.net object
