Package: DGEobj.utils
Type: Package
Title: Differential Gene Expression (DGE) Analysis Utility Toolkit
Version: 1.0.6
Description: 
    Provides a function toolkit to facilitate reproducible RNA-Seq Differential Gene Expression (DGE)
    analysis (Law (2015) <doi:10.12688/f1000research.9005.3>).  The tools include both analysis 
    work-flow and utility functions: mapping/unit conversion, count normalization, accounting for 
    unknown covariates, and more.  This is a complement/cohort to the 'DGEobj' package that 
    provides a flexible container to manage and annotate Differential Gene Expression analysis results.
Authors@R: 
    c(person("John", "Thompson", role = "aut", email = "jrt@thompsonclan.org"),
      person("Connie", "Brett",  role = c("aut", "cre"), email = "connie@aggregate-genius.com"),
      person("Isaac", "Neuhaus", role = "aut", email = "isaac.neuhaus@bms.com"),
      person("Ryan", "Thompson", role = "aut", email = "rct@thompsonclan.org"))
Depends: R (>= 3.5.0)
License: GPL-3
Language: en-US
Encoding: UTF-8
Imports: assertthat, DGEobj (>= 1.0.3), dplyr, methods, stats, stringr
Suggests: biomaRt, canvasXpress, conflicted, edgeR, glue, ggplot2, IHW,
        limma, knitr, qvalue, RNASeqPower, rmarkdown, statmod, sva,
        testthat, zFPKM
biocViews:
RoxygenNote: 7.1.2
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2022-05-19 23:29:26 UTC; conniebrett
Author: John Thompson [aut],
  Connie Brett [aut, cre],
  Isaac Neuhaus [aut],
  Ryan Thompson [aut]
Maintainer: Connie Brett <connie@aggregate-genius.com>
Repository: CRAN
Date/Publication: 2022-05-19 23:50:02 UTC
Built: R 4.6.0; ; 2026-04-26 12:41:37 UTC; unix
