# Generated by roxygen2: do not edit by hand

export(WH)
export(WH_train)
export(WH_train_fit)
export(get_replacement_probability)
export(get_transition_probability)
export(positional_mutation_prob)
export(sample_outcome_prob)
export(sim_seqdata)
exportMethods(as_igraph)
exportMethods(as_lineage_tree)
exportMethods(as_phylo)
exportMethods(dist_replacement)
exportMethods(dist_weighted_hamming)
exportMethods(downsample)
exportMethods(get_leaves)
exportMethods(process_sequence)
exportMethods(prune)
exportMethods(rbind)
exportMethods(simulate)
exportMethods(substr_kmer)
exportMethods(subtract)
exportMethods(subtree)
exportMethods(summarize_kmer)
import(Matrix)
import(dplyr)
import(methods)
importFrom(BiocGenerics,rbind)
importFrom(BiocParallel,bplapply)
importFrom(Rcpp,evalCpp)
importFrom(ape,fastme.bal)
importFrom(ape,read.tree)
importFrom(ape,write.tree)
importFrom(igraph,"E<-")
importFrom(igraph,"V<-")
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,contract)
importFrom(igraph,degree)
importFrom(igraph,distances)
importFrom(igraph,graph.adjacency)
importFrom(igraph,graph_from_edgelist)
importFrom(igraph,induced_subgraph)
importFrom(igraph,permute.vertices)
importFrom(igraph,set_vertex_attr)
importFrom(igraph,simplify)
importFrom(igraph,topo_sort)
importFrom(igraph,vcount)
importFrom(matrixStats,rowLogSumExps)
importFrom(matrixStats,rowMaxs)
importFrom(phangorn,RF.dist)
importFrom(phangorn,phyDat)
importFrom(purrr,map)
importFrom(rBayesianOptimization,BayesianOptimization)
importFrom(rlang,.data)
importFrom(stats,as.dist)
importFrom(stats,dist)
importFrom(stats,rgamma)
importFrom(stats,runif)
importFrom(stringr,str_pad)
importFrom(tensorflow,shape)
importFrom(tensorflow,tf_function)
importFrom(tidyr,replace_na)
useDynLib(DCLEAR)
