CommKern                CommKern
NMI                     Normalized mutual information (NMI)
SBM_net                 Simulated functional and structural
                        connectivity with nested hierarchical community
                        structure
adj_RI                  Adjusted Rand Index (ARI)
community_allegiance    Community Allegiance
community_plot          Communities by layer plot
compute_modularity_matrix
                        Compute modularity matrix
compute_multimodal_mod
                        Compute multimodal modularity matrix
consensus_similarity    Consensus Similarity
count_pairs             Count pairs
degree                  Node degree calculation
entropy                 Entropy
ext_distance            Extrinsic evaluation distance matrix creation
find_start_temp         Starting temperature
get_weights             Simulated network edge weights
group_adj_perturb       Group adjacency matrices
group_network_perturb   Simulated group networks
ham_distance            Hamiltonian distance matrix creation
heatbath_multimodal     Multimodal heatbath algorithm
hms                     Hierarchical multimodal spinglass algorithm
kernel                  Distance-based kernel
matrix_plot             Functional and Structural Matrix Plot
matrix_to_df            Convert matrices to dataframe list for network
purity                  Purity
score_cont_nonparam     Nonparametric score function for distance-based
                        kernel and continuous outcome.
score_cont_semiparam    Semiparametric score function for
                        distance-based kernel and continuous outcome.
score_log_nonparam      Nonparametric score function for distance-based
                        kernel and binary outcome
score_log_semiparam     Semiparametric score function for
                        distance-based kernel
simasd_array            Simulated Array
simasd_comm_df          Simulated partitions of nodes to communities
                        from HMS algorithm
simasd_covars           Simulated demographics dataset modeled of a
                        subset of the preprocessed ABIDE database
simasd_hamil_df         Simulated Hamiltonian values from HMS algorithm
simnet_df_perturb       Simulated network data frame
sort_pairs              Sort pairs
subset_matrix_to_df     Convert matrices to list of data frames for
                        subnetworks
tr                      Trace
up_low                  Bounds of grid search function
zrand                   Rand z-score
