Type: Package
Package: CBASSED50
Title: Process CBASS-Derived PAM Data
Version: 0.2.0
Authors@R: c(
    person(given = "Yulia", family = "Iakovleva",
            role = c("aut"),
            comment = c(ORCID = "0000-0002-0202-7245")),
    person(given = "Luigi", family = "Colin",
            email = "reefgenomics@gmail.com", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0002-6966-2817")),
    person(given = "Christian Robert", family = "Voolstra",
            role = c("aut"),
            comment = c(ORCID = "0000-0003-4555-3795")))
Maintainer: Luigi Colin <reefgenomics@gmail.com>
Description: Tools to process CBASS-derived PAM data efficiently. Minimal requirements are PAM-based photosynthetic efficiency data (or data from any other continuous variable that changes with temperature, e.g. relative bleaching scores) from 4 coral samples (nubbins) subjected to 4 temperature profiles of at least 2 colonies from 1 coral species from 1 site. Please refer to the following CBASS (Coral Bleaching Automated Stress System) papers for in-depth information regarding CBASS acute thermal stress assays, experimental design considerations, and ED5/ED50/ED95 thermal parameters: Nicolas R. Evensen et al. (2023) <doi:10.1002/lom3.10555> Christian R. Voolstra et al. (2020) <doi:10.1111/gcb.15148> Christian R. Voolstra et al. (2025) <doi:10.1146/annurev-marine-032223-024511>.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
Suggests: testthat (>= 3.0.0)
Config/testthat/edition: 3
Imports: drc, rlog, stats, utils, dplyr, ggplot2, readxl, glue
Depends: R (>= 3.5.0)
Date: 2025-05-28
NeedsCompilation: no
Packaged: 2025-06-04 10:40:29 UTC; colinl
Author: Yulia Iakovleva [aut] (ORCID: <https://orcid.org/0000-0002-0202-7245>),
  Luigi Colin [aut, cre] (ORCID: <https://orcid.org/0000-0002-6966-2817>),
  Christian Robert Voolstra [aut] (ORCID:
    <https://orcid.org/0000-0003-4555-3795>)
Repository: CRAN
Date/Publication: 2025-06-06 12:50:08 UTC
Built: R 4.6.0; ; 2026-04-25 14:07:33 UTC; unix
