BeeBDCQuery             Query the bee taxonomy and country checklist
ChaoWrapper             Parallel estimation of species richness in a
                        community using iChao
ColTypeR                Sets up column names and types
GBIFissues              Flags records with GBIF issues
PaigeIntegrater         Integrate manually-cleaned data from Paige
                        Chesshire
USGS_formatter          Find, import, and format USGS data to Darwin
                        Core
atlasDownloader         Download occurrence data from the Atlas of
                        Living Australia (ALA)
bees3sp                 A flagged dataset of 105 random bee occurrence
                        records from the three species
beesChecklist           Download a country-level checklist of bees from
                        Discover Life
beesCountrySubset       A simple scientificName and country_suggested
                        test dataset
beesFlagged             A flagged dataset of 100 random bee occurrence
                        records
beesRaw                 A dataset of 100 random bee occurrence records
                        without flags or filters applied
beesTaxonomy            Download a nearly complete taxonomy of bees
                        globally
chordDiagramR           Build a chord diagram of duplicate occurrence
                        links
continentOutlieRs       Flag continent-level outliers with a provided
                        checklist.
coordUncerFlagR         Flag occurrences with an uncertainty threshold
countryHarmoniseR       Match and harmonise country names
countryNameCleanR       Fix country name issues using a user-input list
countryOutlieRs         Flag country-level outliers with a provided
                        checklist.
dataProvTables          Build a table of data providers for bee
                        occurrence records
dataSaver               Simple function to save occurrence AND EML data
                        as a list
dateFindR               Find dates in other columns
diagonAlley             Find fill-down errors
dirMaker                Set up global directory paths and create
                        folders
dupePlotR               Create a compound bar graph of duplicate data
                        sources
dupeSummary             Identifies duplicate occurrence records
fileFinder              Finds files within a directory
flagAbsent              Flags occurrences that are marked as absent
flagLicense             Flag license protected records
flagRecorder            Loads, appends, and saves occurrence flag data
flagSummaryTable        Build a per-species summary for each and all
                        flags
formattedCombiner       Combine the formatted USGS data with the main
                        dataset
ggRichnessWrapper       ggplot2 extension for a Chao- and iNEXT-wrapper
                        outputs
harmoniseR              Harmonise taxonomy of occurrence data
iNEXTwrapper            Parallel estimation of species richness in a
                        community using iNEXT
idMatchR                Attempt to match database_ids from a prior run
importOccurrences       Imports the most-recent repoMerge data
interactiveMapR         Creates interactive html maps for species
jbd_CfC_chunker         Get country names from coordinates
jbd_Ctrans_chunker      Wraps jbd_coordinates_transposed to identify
                        and fix transposed occurrences
jbd_coordCountryInconsistent
                        Flags coordinates that are inconsistent with
                        the stated country name
jbd_coordinates_precision
                        Flags coordinates for imprecision
jbd_coordinates_transposed
                        Identify transposed geographic coordinates
jbd_create_figures      Create figures reporting the results of the
                        bdc/BeeBDC packages
manualOutlierFindeR     Finds outliers, and their duplicates, as
                        determined by experts
plotFlagSummary         Generate a plot summarising flagged data
readr_BeeBDC            A wrapper for all of the data readr_functions
repoFinder              Find GBIF, ALA, iDigBio, and SCAN files in a
                        directory
repoMerge               Import occurrences from GBIF, ALA, iDigBio, and
                        SCAN downloads
richnessEstimateR       Estimate country, continental, and global
                        species richnesses
richnessPrepR           Prepare occurrence, taxonomy, and checklist
                        data for richness estimation
summaryFun              Create or update the .summary flag column
summaryMaps             Create country-level summary maps of species
                        and occurrence numbers
taxadbToBeeBDC          Import and convert taxadb taxonomies to BeeBDC
                        format
testChecklist           An example of the beesChecklist file
testTaxonomy            An example of the beesTaxonomy file
