Package: BayesBrainMap
Type: Package
Title: Estimate Brain Networks and Connectivity with Population-Derived
        Priors
Version: 0.2.0
Authors@R: c(
    person(given = "Amanda",
           family = "Mejia",
           email = "mandy.mejia@gmail.com",
           role = c("aut", "cre")),
    person(given = "Damon",
           family = "Pham",
           email = "damondpham@gmail.com",
           role = c("aut"),
           comment = c(ORCID = "0000-0001-7563-4727")),
    person(given = "Nohelia",
           family = "Da Silva",
           email = "nohelia.dasilva@gmail.com",
           role = c("ctb"))
    )
Maintainer: Amanda Mejia <mandy.mejia@gmail.com>
Description: Implements Bayesian brain mapping with population-derived priors, 
    including the original model described in Mejia et al. (2020) 
    <doi:10.1080/01621459.2019.1679638>, the model with spatial priors described
    in Mejia et al. (2022) <doi:10.1080/10618600.2022.2104289>, and the model 
    with population-derived priors on functional connectivity described in Mejia
    et al. (2025) <doi:10.1093/biostatistics/kxaf022>. Population-derived priors
    are based on templates representing established brain network maps, for 
    example derived from independent component analysis (ICA), parcellations, 
    or other methods.  Model estimation is based on expectation-maximization or 
    variational Bayes algorithms. Includes direct support for 'CIFTI', 'GIFTI', 
    and 'NIFTI' neuroimaging file formats.
Depends: R (>= 3.6.0)
License: GPL-3
Additional_repositories: https://inla.r-inla-download.org/R/testing
Encoding: UTF-8
Imports: abind, fMRItools (>= 0.7.1), fMRIscrub (>= 0.14.5), foreach,
        Matrix, matrixStats, methods, pesel, SQUAREM, stats, utils
Suggests: ciftiTools (>= 0.13.2), excursions, RNifti, oro.nifti, gifti,
        ggplot2, parallel, doParallel, knitr, rmarkdown, INLA, testthat
        (>= 3.0.0)
RoxygenNote: 7.3.3
URL: https://github.com/mandymejia/BayesBrainMap
BugReports: https://github.com/mandymejia/BayesBrainMap/issues
NeedsCompilation: no
Packaged: 2026-02-02 05:04:23 UTC; ddpham
Author: Amanda Mejia [aut, cre],
  Damon Pham [aut] (ORCID: <https://orcid.org/0000-0001-7563-4727>),
  Nohelia Da Silva [ctb]
Repository: CRAN
Date/Publication: 2026-02-03 09:00:14 UTC
Built: R 4.6.0; ; 2026-04-26 02:47:47 UTC; unix
