# Generated by roxygen2: do not edit by hand

S3method(applyJobFunction,Registry)
S3method(copyRequiredJobFiles,Registry)
S3method(dbCreateJobDefTable,Registry)
S3method(dbGetConnection,SQLiteDriver)
S3method(dbGetJobs,Registry)
S3method(getJobInfo,Registry)
S3method(getJobs,Registry)
S3method(getWorkerNumberOfCPUs,WorkerLinux)
S3method(getWorkerStatus,WorkerLinux)
S3method(killWorkerJob,WorkerLinux)
S3method(listWorkerJobs,WorkerLinux)
S3method(print,ClusterFunctions)
S3method(print,Config)
S3method(print,Job)
S3method(print,Registry)
S3method(print,SubmitJobResult)
S3method(setJobFunction,Registry)
S3method(startWorkerJob,WorkerLinux)
S3method(updateRegistry,Registry)
export(addRegistryPackages)
export(addRegistrySourceDirs)
export(addRegistrySourceFiles)
export(applyJobFunction)
export(batchExpandGrid)
export(batchExport)
export(batchMap)
export(batchMapQuick)
export(batchMapResults)
export(batchQuery)
export(batchReduce)
export(batchReduceResults)
export(batchUnexport)
export(callFunctionOnSSHWorkers)
export(cfBrewTemplate)
export(cfHandleUnknownSubmitError)
export(cfKillBatchJob)
export(cfReadBrewTemplate)
export(checkIds)
export(copyRequiredJobFiles)
export(dbCreateJobDefTable)
export(dbGetJobs)
export(debugMulticore)
export(debugSSH)
export(filterResults)
export(findDisappeared)
export(findDone)
export(findErrors)
export(findExpired)
export(findJobs)
export(findMissingResults)
export(findNotDone)
export(findNotErrors)
export(findNotOnSystem)
export(findNotRunning)
export(findNotStarted)
export(findNotSubmitted)
export(findNotTerminated)
export(findOnSystem)
export(findRunning)
export(findStarted)
export(findSubmitted)
export(findTerminated)
export(getConfig)
export(getErrorMessages)
export(getJob)
export(getJobIds)
export(getJobInfo)
export(getJobLocation)
export(getJobNr)
export(getJobParamDf)
export(getJobResources)
export(getJobs)
export(getLogFiles)
export(getResources)
export(getSSHWorkersInfo)
export(getStatus)
export(grepLogs)
export(installPackagesOnSSHWorkers)
export(killJobs)
export(loadConfig)
export(loadExports)
export(loadRegistry)
export(loadResult)
export(loadResults)
export(makeClusterFunctions)
export(makeClusterFunctionsInteractive)
export(makeClusterFunctionsLSF)
export(makeClusterFunctionsLocal)
export(makeClusterFunctionsMulticore)
export(makeClusterFunctionsOpenLava)
export(makeClusterFunctionsSGE)
export(makeClusterFunctionsSLURM)
export(makeClusterFunctionsSSH)
export(makeClusterFunctionsTorque)
export(makeJob)
export(makeRegistry)
export(makeSSHWorker)
export(makeSubmitJobResult)
export(reduceResults)
export(reduceResultsDataFrame)
export(reduceResultsDataTable)
export(reduceResultsList)
export(reduceResultsMatrix)
export(reduceResultsVector)
export(removeRegistry)
export(removeRegistryPackages)
export(removeRegistrySourceDirs)
export(removeRegistrySourceFiles)
export(resetJobs)
export(sanitizePath)
export(setConfig)
export(setJobFunction)
export(setJobNames)
export(setRegistryPackages)
export(showClusterStatus)
export(showLog)
export(showStatus)
export(sourceRegistryFiles)
export(submitJobs)
export(sweepRegistry)
export(syncRegistry)
export(testJob)
export(updateRegistry)
export(waitForJobs)
import(DBI)
import(RSQLite)
import(checkmate)
import(data.table)
import(methods)
import(stats)
import(utils)
importFrom(BBmisc,"%nin%")
importFrom(BBmisc,catf)
importFrom(BBmisc,checkListElementClass)
importFrom(BBmisc,chunk)
importFrom(BBmisc,clipString)
importFrom(BBmisc,collapse)
importFrom(BBmisc,convertListOfRowsToDataFrame)
importFrom(BBmisc,convertToShortString)
importFrom(BBmisc,dropNamed)
importFrom(BBmisc,extractSubList)
importFrom(BBmisc,filterNull)
importFrom(BBmisc,insert)
importFrom(BBmisc,is.error)
importFrom(BBmisc,isDirectory)
importFrom(BBmisc,isProperlyNamed)
importFrom(BBmisc,isScalarNA)
importFrom(BBmisc,isWindows)
importFrom(BBmisc,load2)
importFrom(BBmisc,lsort)
importFrom(BBmisc,makeFileCache)
importFrom(BBmisc,makeProgressBar)
importFrom(BBmisc,makeSimpleFileLogger)
importFrom(BBmisc,messagef)
importFrom(BBmisc,namedList)
importFrom(BBmisc,names2)
importFrom(BBmisc,requirePackages)
importFrom(BBmisc,save2)
importFrom(BBmisc,seq_col)
importFrom(BBmisc,seq_row)
importFrom(BBmisc,setClasses)
importFrom(BBmisc,setColNames)
importFrom(BBmisc,setRowNames)
importFrom(BBmisc,stopf)
importFrom(BBmisc,suppressAll)
importFrom(BBmisc,system3)
importFrom(BBmisc,vcapply)
importFrom(BBmisc,viapply)
importFrom(BBmisc,vlapply)
importFrom(BBmisc,vnapply)
importFrom(BBmisc,warningf)
importFrom(BBmisc,which.first)
importFrom(brew,brew)
importFrom(digest,digest)
importFrom(sendmailR,sendmail)
importFrom(stringi,stri_extract_first_regex)
importFrom(stringi,stri_split_fixed)
importFrom(stringi,stri_split_regex)
importFrom(stringi,stri_trim_both)
