R: Estimate the Burden of Healthcare-Associated Infections

# Estimate the Burden of Healthcare-Associated Infections

## Documentation for package ‘BHAI’ version 0.99.2

- DESCRIPTION file

## Help Pages

BHAI-package | BHAI:
.PPS | This class is a generic container for PPS data sets.
BHAI | BHAI:
bhai | Main function of the package to estimation of the burden of healthcare-associated infections
bhai-method | Main function of the package to estimation of the burden of healthcare-associated infections
bhai.barplot | Barplot of cases, deaths and DALYs.
bhai.circleplot | Summary plot of number of infections, deaths and DALYs
bhai.prettyTable | Create summary table
bhai.strataplot | Stratified barplot of cases, deaths and DALYs.
eu_pps | Aggregated data of the ECDC PPS 2010-2011.
german_pps_conv | Aggregated data of the german PPS 2010-2011 (convenience sample).
hospital_discharges | Hospital discharges in Germany (2011)
length_of_stay | Average length of stay of survey patients in german PPS 2011 (representative sample)
loi_pps | A list containing length of infections from all patients in the german PPS 2011 representative sample.
mccabe_life_exp | Named list containing remaining life expectancies for each McCabe score (NONFATAL, ULTFATAL, RAPFATAL).
mccabe_scores_distr | The observed McCabe scores (counts) for each infection, age and gender stratum from the ECDC PPS 2011-2012.
num_hai_patients | Number of cases for each infection in the german PPS 2011 (representative sample)
num_hai_patients_by_stratum | Stratified number of cases for each infection in the german PPS 2011 (representative sample)
num_hai_patients_by_stratum_prior | Stratified number of cases for each infection in the german PPS 2011 (convenience sample). This distribution is used as a Prior for the representative sample.
num_survey_patients | Number of survey patients in the german PPS 2011 (representative sample).
population | Population size of Germany in 2011.
PPS | Create a PPS object
PPS-class | This class is a generic container for PPS data sets.
sample.pps | Simulate PPS data
sim_pps | Simulated/subsampled data sets from european PPS
sim_pps_bhai | BHAI with default options was applied to simulated/subsampled data sets from european PPS
sim_pps_bhai_prior | BHAI with prior was applied to simulated/subsampled data sets from european PPS
sim_pps_stratified | BHAI with stratified sampling was applied to simulated/subsampled data sets from european PPS