Package: BASiNET
Title: Classification of RNA Sequences using Complex Network Theory
Version: 0.0.5
Authors@R: c(
        person("Eric Augusto", "Ito", 
        email = "ericaugustoito@hotmail.com",
        role = "aut",
        comment = c(ORCID = "0000-0002-0030-6881")),
        person("Fabricio Martins", "Lopes", 
        email = "fabricio@utfpr.edu.br",
        role = c("aut","cre"),
        comment = c(ORCID = "0000-0002-8786-3313")))
Description: It makes the creation of networks from sequences of RNA, with this is done the abstraction of characteristics of these networks with a methodology of threshold for the purpose of making a classification between the classes of the sequences. There are four data present in the 'BASiNET' package, "sequences", "sequences2", "sequences-predict" and "sequences2-predict" with 11, 10, 11 and 11 sequences respectively. These sequences were taken from the data set used in the article (LI, Aimin; ZHANG, Junying; ZHOU, Zhongyin, 2014) <doi:10.1186/1471-2105-15-311>, these sequences are used to run examples. The BASiNET was published on Nucleic Acids Research, (ITO, Eric; KATAHIRA, Isaque; VICENTE, Fábio; PEREIRA, Felipe; LOPES, Fabrício, 2018) <doi:10.1093/nar/gky462>.
Depends: R (>= 3.4.0)
License: GPL-3
Encoding: UTF-8
Imports: igraph, Biostrings, RWeka, randomForest, rmcfs, grDevices,
        graphics, stats, rJava
biocViews: Software, BiologicalQuestion, GenePrediction
RoxygenNote: 6.1.0
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2022-08-18 12:17:20 UTC; matheuspimenta
Repository: CRAN
Date/Publication: 2022-08-19 08:50:25 UTC
Author: Eric Augusto Ito [aut] (<https://orcid.org/0000-0002-0030-6881>),
  Fabricio Martins Lopes [aut, cre]
    (<https://orcid.org/0000-0002-8786-3313>)
Maintainer: Fabricio Martins Lopes <fabricio@utfpr.edu.br>
Built: R 4.6.0; ; 2026-04-26 16:22:27 UTC; unix
