autoDeletion	autoDeletion
calc.Score	calc.Score
calcIntScore_C	Apoderoides-internal
calcOutScore_C	Apoderoides-internal
deleteAnomaly	deleteAnomaly
deleteSubFunc	Apoderoides-internal
extractOTUbyRankName_C	Apoderoides-internal
findSubTips_C	Apoderoides-internal
findUpperNode	Apoderoides-internal
get.upperRank	get.upperRank
getAllCentroids	getAllCentroids
getAllCentroids_C	Apoderoides-internal
getAllMRCAs	getAllMRCAs
getAllRankNames	Apoderoides-internal
getRankCentroid_C	Apoderoides-internal
getRankMRCA	Apoderoides-internal
getTipNo_C	Apoderoides-internal
is.monophyleticByRank	Apoderoides-internal
testRankList	testRankList
testTree	testTree
