R: Analyse Animal Sequential Behaviour and Communication

# Analyse Animal Sequential Behaviour and Communication

## Documentation for package ‘AnimalSequences’ version 0.2.0

- DESCRIPTION file

## Help Pages

association_metrics | Calculate Association Metrics for Sequences
average_seq_length | Calculate the Average Length of Sequences
calculate_conditional_entropy | Calculate Conditional Entropy of B given A in Bits
calculate_distance_matrix | Calculate Distance Matrix from Co-occurrence Matrix
calculate_transition_counts | Calculate Transition Counts from Sequences
calculate_transition_probs | Calculate Transition Probabilities from Sequences
cluster_elements | Cluster Elements Using Hierarchical Clustering
compare_distinct_elements_per_list_item | Compare True and Shuffled Distinct Elements per List Item
cooccurrence_matrix | Calculate Co-occurrence Matrix for Sequences
count_distinct_elements | Count Distinct Elements in Sequences
count_distinct_elements_per_list_item | Count Distinct Elements per List Item
count_distinct_elements_per_list_item_shuffled | Count Distinct Elements per List Item in Shuffled Sequences
element_covariate | Calculate Element-Covariate Conditional Probabilities
element_covariate_network | Plot the network of elements and covariates based on the long format of sequences
element_duration | Calculate Individual Element Durations
element_position | Calculate Median Position of Each Element in Sequences
find_most_similar_columns | Find Most Similar Columns in a Distance Matrix
generate_sequence | Generate a Sequence of Elements
long_to_sequences | Convert Long Format to Sequences
median_seq_length | Calculate the Median Length of Sequences
menzerath_plot | Create a Menzerath-Altmann Plot
min_max_seq_length | Calculate the Minimum and Maximum Length of Sequences
perform_clustering | Perform Various Clustering Methods
plot_seq_length_distribution | Plot the Distribution of Sequence Lengths
redundancy | Calculate Observed and Expected Redundancy of Sequences
sd_seq_length | Calculate the Standard Deviation of Sequence Lengths
sequences_to_long | Convert Sequences to Long Format
sequence_duration_summary | Summarize Sequence Durations
sequence_length_summary | Summarize Sequence Lengths
sequence_length_summary_covariate | Summarize Sequence Lengths by Covariate
sequence_length_summary_element | Summarize Sequence Lengths by Element
shuffle_sequences_across | Shuffle Elements Across All Sequences
shuffle_sequences_within | Shuffle Elements Within Each Sequence
temporal_overlap | Temporal Overlap
transition_chisq | Perform a Chi-Squared Test for Transition Counts
transition_entropy | Calculate Transition Entropy for Sequences
transition_predictions | Transition Predictions
transition_test | Perform a Statistical Test for Transition Probabilities
zipf_plot | Create a Zipf's Law Plot