AHMbook-package         Functions and data for the Book "Applied
                        Hierarchical Modeling in Ecology" Volumes 1 and
                        2
BerneseOberland         Landscape data for the Bernese Oberland around
                        Interlaken, in the Alps of central Switzerland
Color_Ramps             Color Ramps
EurasianLynx            Data for Eurasian lynx from Switzerland and
                        Italy (only Alps).
Finnmark                Data from surveys of birds in Finnmark in NE
                        Norway
FrenchPeregrines        Data for observations of peregrines from the
                        French Jura mountains
HubbardBrook            Warbler point count data from the Hubbard Brook
                        Experimental Forest
MHB2014                 Data from the Swiss Breeding Bird Survey MHB
                        2014
MesoCarnivores          Camera trap data for Bobcat, Coyote and Red Fox
SwissAtlasHa            Data for 1ha quadrats from the Swiss Breeding
                        Bird Atlas
SwissEagleOwls          Territory-level, multi-state
                        detection/nondetection data for Eagle Owls in
                        Switzerland
SwissMarbledWhite       Data for Swiss Marbled White butterflies
SwissSquirrels          Data for Red Squirrels in Switzerland from the
                        Swiss breeding bird survey MHB
SwissTits               Data from the Swiss Breeding Bird Survey for 6
                        species of tits
UKmarbledWhite          Data for UK Marbled White butterflies
bigCrossCorr            Cross correlations for MCMC output
ch2marray               Converts capture-histories to an m-array
crestedTit              Count data from the Swiss Breeding Bird Survey
                        MHB for crested tits from 1999 to 2015
crossbillAHM            Data from the Swiss Breeding Bird Survey MHB
                        for European Crossbill from 2001 to 2012
cswa                    Point count and spot-mapping data for
                        Chestnut-sided Warbler
data.fn                 Simulate count data under a binomial N-mixture
                        model
dragonflies             Fictional data for dragonflies
duskySalamanders        Age-classified counts of dusky salamanders from
                        two mid-Atlantic states in the USA
e2dist                  Calculates the pair-wise distances between two
                        sets of points
fitstats                Functions to return fit statistics
getLVcorrMat            Compute results of a Joint Species Distribution
                        Model (JSDM)
graphSSM                Plot the results for a Gaussian state-space
                        model
greenWoodpecker         Count data from the Swiss Breeding Bird Survey
                        for Green Woodpeckers from 2004 to 2017
image_scale             Helper function to draw scale for image
issj.sim                Simulate open distance sampling data for the
                        Island Scrub Jays
map.Nmix.resi           Mapping of residuals
modSelFP                Model selection results from a list of
                        'unmarkedFitOccuFP' models
piFuns                  Compute multinomial cell probabilities
playRN                  Function to play Royle-Nichols (RN) model
plot_Nmix_resi          Produce some residual plots
ppc.plot                Plot results from posterior predictive check
sim.fn                  Simulate a Poisson point process
sim.ldata               Simulation of distance sampling data.
sim.pdata               Simulate non-hierarchical point transect (=
                        point count) data
sim.spatialDS           Simulates data for a basic spatial distance
                        sampling model
sim.spatialHDS          Simulates data for a hierarchical spatial
                        distance sampling model
sim3Occ                 Simulate detection/nondetection data for static
                        3-level occupancy models
simCJS                  Simulate individual capture-histories under a
                        Cormack-Jolly-Seber (CJS) survival model
simComm                 Simulate community occupancy or community
                        abundance data
simDCM                  Simulate detection/nondetection data under a
                        general dynamic community (site-occupancy)
                        model
simDM                   Simulate count data under the dynamic N-mixture
                        model of Dail-Madsen
simDSM                  Simulate line transect data for density surface
                        modeling
simDataDK               Simulate data for an integrated species
                        distribution model (SDM) of Dorazio-Koshkina
simDemoDynocc           Simulate data under a demographic dynamic
                        occupancy model
simDynocc               Simulate detection/nondetection data under a
                        wide variety of non-spatial dynamic occupancy
                        models
simDynoccSpatial        Simulate data under a dynamic occupancy model
                        with spatial autocorrelation
simDynoccSpatialData    Simulated data from 'simDynoccSpatial' for AHM2
                        section 9.6.1.2 (page 564)
simExpCorrRF            Create a Gaussian random field with negative
                        exponential correlation
simFrogDisease          Simulate detection data for diseased frogs
simHDS                  Simulate data under hierarchical distance
                        sampling protocol (line or point)
simHDSg                 Simulate data under HDS protocol with groups
simHDSopen              Simulate open hierarchical distance sampling
                        data
simHDSpoint             Simulate data under hierarchical distance
                        sampling point transect protocol
simHDStr                Simulate HDS time-removal or double-observer
                        data
simIDS                  Simulate data for an integrated distance
                        sampling, point count and occupancy study
simMultMix              Simulate the multinomial-mixture model
simNmix                 Simulate data for binomial and multinomial
                        mixture models
simNmixSpatial          Simulate replicated counts under a spatial,
                        static binomial N-mixture model
simNpC                  Generate counts from a single population
                        observed over T years under a binomial
                        observation process
simOcc                  Simulate data for static occupancy models under
                        wide range of conditions
simOccSpatial           Simulate replicated detection/nondetection data
                        under a spatial, static occupancy model
simOccttd               Simulate time-to-detection occupancy data
                        (single visits)
simPH                   Generate counts under a variant of a
                        'phenomenological model'
simPOP                  Simulate data for a demographic state-space
                        model
simPPe                  Simulate a spatial point pattern in a
                        heterogeneous landscape
simSpatialDSline        Simulate data for a standardized line transect
simSpatialDSte          Simulate data for replicate line transect
                        surveys with temporary emigration
simpleNmix              Simulate N-mixture data under a time-for-space
                        substitution design
spline.prep             Prepare input for BUGS model when fitting a
                        spline for a covariate
spottedWoodpecker       Data for observations of Middle Spotted
                        Woodpecker in Switzerland
standardize             Scaling and centering of vectors, matrices and
                        arrays
treeSparrow             American Tree Sparrow data from Alaska
ttdPeregrine            Time-to-detection data for peregrines from the
                        French Jura mountains
valid_data              Validates simulated observational data against
                        data-generating values.
wagtail                 Data for Dutch wagtails
waterVoles              Data for the Mighty Water Voles of Scotland,
                        UK.
wigglyLine              Coordinates for a wiggly line transect
wigglyOcc               Simulate static occupancy data
willowWarbler           Constant effort site (CES) data for British
                        Willow Warblers
zinit                   Starting values for survival analysis in
                        JAGS/BUGS
