R: Easy Visualization of ABH Genotypes

# Easy Visualization of ABH Genotypes

## Documentation for package ‘ABHgenotypeR’ version 1.0.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

ABHgenotypeR-package | ABHgenotypeR: A package for easy visualization and manipulating of ABH genotypes.
ABHgenotypeR | ABHgenotypeR: A package for easy visualization and manipulating of ABH genotypes.
correctStretches | Correct short miscalled stretches based on flanking alleles.
correctUndercalledHets | Correct undercalled heterozygous sites based on flanking alleles.
imputeByFlanks | Impute missing genotypes based on flanking alleles
plotAlleleFreq | Plot the parental allele frequencies along the chromosomes.
plotCompareGenos | Compare to genotype matrices
plotGenos | Plot graphical genotypes.
plotMarkerDensity | Plot the marker density along the chromosomes.
readABHgenotypes | Read in the output of the genosToABH plugin.
reportGenos | Report the total and relative number of each allele in a genotype object.
writeABHgenotypes | Export a genotype list to a .csv file.