R: Yet Another TAxonomy Handler

# Yet Another TAxonomy Handler

## Documentation for package ‘yatah’ version 1.0.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

abundances | Abundance table for 199 samples.
all_ranks | Ranks handled by 'yatah'
get_all_clades | Extract all clades present in the lineages
get_clade | Extract the clade of a desired rank in a lineage
get_last_clade | Extract the last clade of a lineage
get_last_rank | Extract the last rank of a lineage
is_at_least_rank | Test if a lineage goes down to a specified rank
is_clade | Test if a lineage belongs to a clade
is_lineage | Test if a string is a lineage
is_rank | Test if a lineage goes down to a specified rank
taxtable | Taxonomic table
taxtree | Taxonomic tree
trim_common | Trim lineages until the shallowest common rank.
trim_rank | Trim lineages until a specified rank
trim_void | Trim void ranks in lineages