GAM_summary_and_plot    GAM functions for Xpose 4
absval.cwres.vs.cov.bw
                        Absolute conditional weighted residuals vs
                        covariates for Xpose 4
absval.cwres.vs.pred    Absolute population conditional weighted
                        residuals vs population predictions for Xpose 4
absval.cwres.vs.pred.by.cov
                        Absolute value of the conditional weighted
                        residuals vs. population predictions,
                        conditioned on covariates, for Xpose 4
absval.iwres.cwres.vs.ipred.pred
                        Absolute population weighted residuals vs
                        population predictions, and absolute individual
                        weighted residuals vs individual predictions,
                        for Xpose 4
absval.iwres.vs.cov.bw
                        box and whisker plots of the absolute value of
                        the individual weighted residuals vs.
                        covariates
absval.iwres.vs.idv     absolute value of the individual weighted
                        residuals vs. the independent variable
absval.iwres.vs.ipred   Absolute individual weighted residuals vs
                        individual predictions for Xpose 4
absval.iwres.vs.ipred.by.cov
                        Absolute individual weighted residuals vs
                        individual predictions, conditioned on
                        covariates, for Xpose 4
absval.iwres.vs.pred    Absolute individual weighted residuals vs
                        population predictions or independent variable
                        for Xpose 4
absval.wres.vs.cov.bw   Absolute weighted residuals vs covariates for
                        Xpose 4
absval.wres.vs.idv      Absolute value of (C)WRES vs. independent
                        variable plot in Xpose4.
absval.wres.vs.pred     Absolute population weighted residuals vs
                        population predictions for Xpose 4
absval.wres.vs.pred.by.cov
                        Absolute population weighted residuals vs
                        population predictions, conditioned on
                        covariates, for Xpose 4
absval_delta_vs_cov_model_comp
                        Model comparison plots, of absolute differences
                        in goodness-of-fit predictors against
                        covariates, for Xpose 4
add.grid.table          Print tables or text in a grid object
add.model.comp          Additional model comparison plots, for Xpose 4
add_transformed_columns
                        Column-transformation functions for Xpose 4
addit.gof               Additional goodness-of-fit plots, for Xpose 4
autocorr.cwres          Autocorrelation of conditional weighted
                        residuals for Xpose 4
autocorr.iwres          autocorrelation of the individual weighted
                        residuals
autocorr.wres           Autocorrelation of weighted residuals for Xpose
                        4
basic.gof               Basic goodness-of-fit plots, for Xpose 4
basic.model.comp        Basic model comparison plots, for Xpose 4
boot.hist               Function to create histograms of results from
                        the 'bootstrap' tool in PsN
bootgam.print           Print summary information for a bootgam or
                        bootscm
bootscm.import          Import bootscm data into R/Xpose
cat.dv.vs.idv.sb        Categorical observations vs. independent
                        variable using stacked bars.
cat.pc                  Categorical (visual) predictive check.
change.parm             Change parameter scope.
change.var.name         Changes the name of an Xpose data item
change.xlabel           Changes the label of an Xpose data item
change.xvardef          Change Xpose variable definitions.
change_graphical_parameters
                        Functions changing variable definitions in
                        Xpose 4
change_misc_parameters
                        Functions changing miscellaneous parameter
                        settings in Xpose 4
compute.cwres           Compute the Conditional Weighted Residuals
cov.splom               Plot scatterplot matrices of parameters, random
                        parameters or covariates
create.xpose.plot.classes
                        Create xpose.multiple.plot class.
createXposeClasses      This function creates the Xpose data classes
                        ("xpose.data" and "xpose.prefs")
cwres.dist.hist         Histogram of conditional weighted residuals
                        (CWRES), for Xpose 4
cwres.dist.qq           Quantile-quantile plot of conditional weighted
                        residuals (CWRES), for Xpose 4
cwres.vs.cov            Conditional Weighted residuals (CWRES) plotted
                        against covariates, for Xpose 4
cwres.vs.idv            Population conditional weighted residuals
                        (CWRES) plotted against the independent
                        variable (IDV) for Xpose 4
cwres.vs.idv.bw         Box-and-whisker plot of conditional weighted
                        residuals vs the independent variable for Xpose
                        4
cwres.vs.pred           Population conditional weighted residuals
                        (CWRES) plotted against population predictions
                        (PRED) for Xpose 4
cwres.vs.pred.bw        Box-and-whisker plot of conditional weighted
                        residuals vs population predictions for Xpose 4
cwres.wres.vs.idv       Weighted residuals (WRES) and conditional WRES
                        (CWRES) plotted against the independent
                        variable (IDV)
cwres.wres.vs.pred      Weighted residuals (WRES) and conditional WRES
                        (CWRES) plotted against the population
                        predictions (PRED)
dOFV.vs.cov             Change in individual objective function value
                        vs. covariate value.
dOFV.vs.id              Change in Objective function value vs. removal
                        of individuals.
dOFV1.vs.dOFV2          Change in individual objective function value 1
                        vs. individual objective function value 2.
data.checkout           Check through the source dataset to detect
                        problems
data_extract_or_assign
                        Extract or assign data from an xpose.data
                        object.
db.names                Prints the contents of an Xpose data object
dv.preds.vs.idv         Observations (DV), individual predictions
                        (IPRED) and population predictions (IPRED)
                        plotted against the independent variable (IDV),
                        for Xpose 4
dv.vs.idv               Observations (DV) plotted against the
                        independent variable (IDV) for Xpose 4
dv.vs.ipred             Observations (DV) plotted against individual
                        predictions (IPRED) for Xpose 4
dv.vs.ipred.by.cov      Dependent variable vs individual predictions,
                        conditioned on covariates, for Xpose 4
dv.vs.ipred.by.idv      Dependent variable vs individual predictions,
                        conditioned on independent variable, for Xpose
                        4
dv.vs.pred              Observations (DV) plotted against population
                        predictions (PRED) for Xpose 4
dv.vs.pred.by.cov       Dependent variable vs population predictions,
                        conditioned on covariates, for Xpose 4
dv.vs.pred.by.idv       Dependent variable vs population predictions,
                        conditioned on independent variable, for Xpose
                        4
dv.vs.pred.ipred        Observations (DV) are plotted against
                        individual predictions (IPRED) and population
                        predictions (PRED), for Xpose 4
export.graph.par        Exports Xpose graphics settings to a file.
export.variable.definitions
                        Exports Xpose variable definitions to a file
                        from an Xpose data object.
gof                     Structured goodness of fit diagnostics.
import.graph.par        Imports Xpose graphics settings from a file to
                        an Xpose data object.
import.variable.definitions
                        Imports Xpose variable definitions from a file
                        to an Xpose data object.
ind.plots               Observations (DV), individual predictions
                        (IPRED) and population predictions (PRED) are
                        plotted against the independent variable for
                        every individual in the dataset, for Xpose 4
ind.plots.cwres.hist    Histograms of weighted residuals for each
                        individual in an Xpose data object, for Xpose 4
ind.plots.cwres.qq      Quantile-quantile plots of weighted residuals
                        for each individual in an Xpose data object,
                        for Xpose 4
ipred.vs.idv            Individual predictions (IPRED) plotted against
                        the independent variable (IDV) for Xpose 4
iwres.dist.hist         Histogram of individual weighted residuals
                        (IWRES), for Xpose 4
iwres.dist.qq           Quantile-quantile plot of individual weighted
                        residuals (IWRES), for Xpose 4
iwres.vs.idv            Individual weighted residuals (IWRES) plotted
                        against the independent variable (IDV) for
                        Xpose 4
kaplan.plot             Kaplan-Meier plots of (repeated) time-to-event
                        data
make.sb.data            Make stacked bar data set.
npc.coverage            Function to plot the coverage of the Numerical
                        Predictive Check
nsim                    Extract or set the value of the Nsim slot.
par_cov_hist            Plot the parameter or covariate distributions
                        using a histogram
par_cov_qq              Plot the parameter or covariate distributions
                        using quantile-quantile (Q-Q) plots
par_cov_summary         Summarize individual parameter values and
                        covariates
parm.vs.cov             Parameters plotted against covariates, for
                        Xpose 4
parm.vs.parm            Plot parameters vs other parameters
pred.vs.idv             Population predictions (PRED) plotted against
                        the independent variable (IDV) for Xpose 4
print.xpose.multiple.plot
                        Print an Xpose multiple plot object.
randtest.hist           Function to create a histogram of results from
                        the randomization test tool ('randtest') in PsN
ranpar.vs.cov           Random parameters plotted against covariates,
                        for Xpose 4
read.TTE.sim.data       Read (repeated) time-to-event simulation data
                        files.
read.nm.tables          Reading NONMEM table files
read.npc.vpc.results    Read the results file from a Numerical or
                        Visual Predictive Check run in PsN
read.vpctab             Read the vpctab file from PsN into Xpose
read_NM_output          Read NONMEM output files into Xpose 4
read_nm_table           Read NONMEM table files produced from
                        simulation.
reset.graph.par         Resets Xpose variable definitions to factory
                        settings
runsum                  Print run summary in Xpose 4
simpraz.xpdb            Simulated prazosin Xpose database.
simprazExample          Function to create files for the simulated
                        prazosin example in Xpose
tabulate.parameters     Tabulate the population parameter estimates
wres.dist.hist          Histogram of weighted residuals (WRES), for
                        Xpose 4
wres.dist.qq            Quantile-quantile plot of weighted residuals
                        (WRES), for Xpose 4
wres.vs.cov             Weighted residuals (WRES) plotted against
                        covariates, for Xpose 4
wres.vs.idv             Population weighted residuals (WRES) plotted
                        against the independent variable (IDV) for
                        Xpose 4
wres.vs.idv.bw          Box-and-whisker plot of weighted residuals vs
                        the independent variable for Xpose 4
wres.vs.pred            Population weighted residuals (WRES) plotted
                        against population predictions (PRED) for Xpose
                        4
wres.vs.pred.bw         Box-and-whisker plot of weighted residuals vs
                        population predictions for Xpose 4
xlabel                  Extract and set labels for Xpose data items.
xp.boot.par.est         Compare parameter estimates for covariate
                        coefficients
xp.boot.par.est.corr    Correlations between covariate coefficients
xp.daic.npar.plot       Distribution of difference in AIC
xp.distr.mod.size       Plot of model size distribution for a bootgam
                        or bootscm
xp.dofv.npar.plot       Distribution of difference in OFV
xp.dofv.plot            OFV difference (optimism) plot.
xp.get.disp             Default function for calculating dispersion in
                        'xpose.gam'.
xp.inc.cond.stab.cov    Trace plots for conditional indices
xp.inc.ind.cond.stab.cov
                        Trace plots for conditional indices rper
                        replicate number
xp.inc.prob             Inclusion frequency plot
xp.inc.prob.comb.2      Inclusion frequency plot for combination of
                        covariates.
xp.inc.stab.cov         Inclusion stability plot A plot of the
                        inclusion frequency of covariates vs
                        bootgam/bootscm iteration number. This plot can
                        be used to evaluate whether sufficient
                        iterations have been performed.
xp.incl.index.cov       Plot of inclusion index of covariates.
xp.incl.index.cov.comp
                        Inclusion index individuals, compare between
                        covariates.
xp.incl.index.cov.ind   Individual inclusion index
xp.scope3               Define a scope for the gam.  Used as default
                        input to the 'scope' argument in 'xpose.gam'
xpose.VPC               Visual Predictive Check (VPC) using XPOSE
xpose.VPC.both          Xpose Visual Predictive Check (VPC) for both
                        continuous and Limit of Quantification data.
xpose.VPC.categorical   Xpose visual predictive check for categorical
                        data.
xpose.bootgam           Title
xpose.data              Create an Xpose data object
xpose.data-class        Class xpose.data
xpose.gam               Stepwise GAM search for covariates on a
                        parameter (Xpose 4)
xpose.license.citation
                        Displays the Xpose license and citation
                        information
xpose.logTicks          Functions to create nice looking axes when
                        using Log scales.
xpose.multiple.plot     Create and object with class
                        "xpose.multiple.plot".
xpose.multiple.plot-class
                        Class for creating multiple plots in xpose
xpose.multiple.plot.default
                        Xpose 4 generic function for plotting multiple
                        lattice objects on one page
xpose.panel.bw          Default box-and-whisker panel function for
                        Xpose 4
xpose.panel.default     Default panel function for Xpose 4
xpose.panel.histogram   Default histogram panel function for Xpose 4
xpose.panel.qq          Default QQ panel function for Xpose 4
xpose.panel.splom       Scatterplot matrix panel function for Xpose 4
xpose.plot.bw           The generic Xpose functions for box-and-whisker
                        plots
xpose.plot.default      The Xpose 4 generic functions for continuous
                        y-variables.
xpose.plot.histogram    The Xpose 4 generic functions for continuous
                        y-variables.
xpose.plot.qq           The generic Xpose functions for QQ plots
xpose.plot.splom        The Xpose 4 generic functions for scatterplot
                        matrices.
xpose.prefs-class       Class "xpose.prefs"
xpose.print             Summarize an xpose database
xpose.string.print      Print a pretty string.
xpose4                  Classic menu system for Xpose 4
xpose4-package          The Xpose Package
xsubset                 Extract or set the value of the Subset slot.
xvardef                 Extract and set Xpose variable definitions.
