.chargeCatchingAA	dot-chargeCatchingAA
.chColNa	dot-chColNa
.checkModTy	dot-checkModTy
.countLET	dot-countLET
.countModif	dot-countModif
.CtermPepCut	dot-CtermPepCut
.evalIsoFra	dot-evalIsoFra
.exNamesTyDeList	dot-exNamesTyDeList
.multMatByColNa	dot-multMatByColNa
.NtermPepCut	dot-NtermPepCut
.parCombinateAllAndSum	dot-parCombinateAllAndSum
.prefFragPattern	dot-prefFragPattern
.singleSpecModif	dot-singleSpecModif
.termPepCut	dot-termPepCut
AAfragSettings	AAfragSettings
addMassModif	addMassModif
checkModTy	checkModTy
combinateAllAndSum	combinateAllAndSum
combinatIntTable	combinatIntTable
corInDelShift	corInDelShift
corMutShift	corMutShift
countChildrenParent	countChildrenParent
countPotModifAAs	countPotModifAAs
evalIsoFragm	evalIsoFragm
fragmentSeq	fragmentSeq
identifFixedModif	identifFixedModif
identifVarModif	identifVarModif
identifyPepFragments	identifyPepFragments
makeFragments	makeFragments
modifFragmTabOutput	modifFragmTabOutput
plotFragmLoc	plotFragmLoc
plotMgfLike	plotMgfLike
plotNTheor	plotNTheor
plotPrefFragPat	plotPrefFragPat
randMassByMut	randMassByMut
randMassByStochastic	randMassByStochastic
scoreChargeCatch	scoreChargeCatch
scoreFragments	scoreFragments
scorePrefFrag	scorePrefFrag
scoreProteinFragments	scoreProteinFragments
