Package: varitas
Type: Package
Title: Variant Calling in Targeted Analysis Sequencing Data
Version: 0.0.2
Date: 2020-11-03
Authors@R: c(
  person("Adam", "Mills", role = c("aut", "cre"), email = "Adam.Mills@icr.ac.uk"),
  person("Erle", "Holgersen", role = "aut"),
  person("Ros", "Cutts", role = "aut"),
  person("Syed", "Haider", role = "aut", email = "Syed.Haider@icr.ac.uk")
  )
Description: Multi-caller variant analysis pipeline for targeted analysis sequencing (TAS) data. Features a modular, automated workflow that can start with raw reads and produces a user-friendly PDF summary and a spreadsheet containing consensus variant information.
SystemRequirements: perl, bedtools (>=2.27.1), bwa
License: GPL-2
Suggests: testthat, knitr, rmarkdown, futile.logger
Imports: stringr, dplyr, yaml, openxlsx, VennDiagram, assertthat,
        magrittr, tools, utils, tidyr, doParallel, foreach
RoxygenNote: 6.1.1
Encoding: UTF-8
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2020-11-03 14:25:11 UTC; amills
Author: Adam Mills [aut, cre],
  Erle Holgersen [aut],
  Ros Cutts [aut],
  Syed Haider [aut]
Maintainer: Adam Mills <Adam.Mills@icr.ac.uk>
Repository: CRAN
Date/Publication: 2020-11-14 00:30:03 UTC
Built: R 4.6.0; ; 2026-04-30 05:45:40 UTC; unix
