R: Visualization of Viral Protein Sequence Diversity Dynamics

# Visualization of Viral Protein Sequence Diversity Dynamics

## Documentation for package ‘vDiveR’ version 2.2.0

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

concat_conserved_kmer | k-mer sequences concatenation
extract_from_GISAID | Extract metadata via fasta file from GISAID
extract_from_NCBI | Extract metadata via fasta file from ncbi
json2csv | JSON2CSV
JSON_sample | DiMA (v5.0.9) JSON Output File
match_region_to_target | Map data region to ggplot2 region
metadata | Metadata Input Sample
metadata_extraction | Metadata Extraction from NCBI/GISAID (EpiFlu/EpiCoV/EpiPox/EpiArbo) FASTA file
plot_conservation_level | Conservation Levels Distribution Plot
plot_correlation | Entropy and total variant incidence correlation plot
plot_dynamics_protein | Dynamics of Diversity Motifs (Protein) Plot
plot_dynamics_proteome | Dynamics of Diversity Motifs (Proteome) Plot
plot_entropy | Entropy plot
plot_time | Time Distribution of Sequences Plot
plot_world_map | Geographical Distribution of Sequences Plot
proteins_1host | DiMA (v5.0.9) JSON converted-CSV Output Sample 1
protein_2hosts | DiMA (v5.0.9) JSON converted-CSV Output Sample 2