IDS                     Fit the integrated distance sampling model of
                        Kery et al. (2022).
MesoCarnivores          Occupancy data for coyote, red fox, and bobcat
SE-methods              Methods for Function SE in Package 'unmarked'
SSE                     Compute Sum of Squared Residuals for a Model
                        Fit.
Switzerland             Swiss landscape data
[-methods               Methods for bracket extraction [ in Package
                        'unmarked'
backTransform-methods   Methods for Function backTransform in Package
                        'unmarked'
birds                   BBS Point Count and Occurrence Data from 2 Bird
                        Species
bup                     Extract Best Unbiased Predictors (BUPs) of
                        latent variables from 'ranef' output
coef-methods            Methods for Function coef in Package 'unmarked'
colext                  Fit the dynamic occupancy model of MacKenzie
                        et. al (2003)
computeMPLElambda       Compute the penalty weight for the MPLE
                        penalized likelihood method
confint-methods         Methods for Function confint in Package
                        'unmarked'
crossVal                Cross-validation methods for fitted 'unmarked'
                        models and fit lists
crossbill               Detection/non-detection data on the European
                        crossbill (_Loxia curvirostra_)
cruz                    Landscape data for Santa Cruz Island
csvToUMF                Convert .CSV File to an unmarkedFrame
detFuns                 Distance-sampling detection functions and
                        associated density functions
distsamp                Fit the hierarchical distance sampling model of
                        Royle et al. (2004)
distsampOpen            Open population model for distance sampling
                        data
fitList                 Create a list of fitted 'unmarked' models
fitted                  Calculate fitted (expected) values from a model
formatDistData          Bin distance data
formatMult              Create unmarkedMultFrame from Long Format Data
                        Frame
formatWide              Convert between wide and long data formats.
frogs                   2001 Delaware North American Amphibian
                        Monitoring Program Data
gdistremoval            Fit the combined distance and removal model of
                        Amundson et al. (2014).
gdistsamp               Fit the generalized distance sampling model of
                        Chandler et al. (2011).
getB-methods            Methods for Function getB in Package 'unmarked'
getFP-methods           Methods for Function getFP in Package
                        'unmarked'
getP                    Get detection probability matrix from a fitted
                        model
gf                      Green frog count index data
gmultmix                Generalized multinomial N-mixture model
goccu                   Fit the multi-scale occupancy model of Nichols
                        et al. (2008)
gpcount                 Generalized binomial N-mixture model for
                        repeated count data
issj                    Distance-sampling data for the Island Scrub Jay
                        (_Aphelocoma insularis_)
jay                     European Jay data from the Swiss Breeding Bird
                        Survey 2002
lambda2psi              Convert Poisson mean (lambda) to probability of
                        occurrence (psi).
linearComb-methods      Methods for Function linearComb in Package
                        'unmarked'
linetran                Simulated line transect data
makePiFuns              Create functions to compute multinomial cell
                        probabilities
mallard                 Mallard count data
masspcru                Massachusetts North American Amphibian
                        Monitoring Program Data
modSel                  Model selection on a list of 'unmarked' model
                        fits
modSel,unmarkedFitList-method
                        Class "unmarkedFitList"
multinomPois            Multinomial-Poisson Mixtures Model
multmixOpen             Open population multinomial N-mixture model
nmixTTD                 Fit the N-mixture Time-to-detection Model of
                        Strebel et al. (2021)
nonparboot              Get non-parametric bootstrap samples from an
                        'unmarked' model
occu                    Fit the MacKenzie et al. (2002) Occupancy Model
occuCOP                 Fit the occupancy model using count data
occuComm                Fit a community occupancy model with
                        species-level random effects
occuFP                  Fit occupancy models when false positive
                        detections occur (e.g., Royle and Link [2006]
                        and Miller et al. [2011])
occuMS                  Fit Multi-State Occupancy Models (Nichols et
                        al. 2007, MacKenzie et al. 2009)
occuMulti               Fit the multi-species occupancy model of Rota
                        et al. (2016)
occuPEN                 Fit the MacKenzie et al. (2002) Occupancy Model
                        with the penalized likelihood methods of
                        Hutchinson et al. (2015)
occuPEN_CV              Fit the MacKenzie et al. (2002) Occupancy Model
                        with the penalized likelihood methods of
                        Hutchinson et al. (2015) using cross-validation
occuRN                  Fit the occupancy model of Royle and Nichols
                        (2003)
occuTTD                 Fit Single-Season and Dynamic Time-to-detection
                        Occupancy Models
optimizePenalty-methods
                        Identify Optimal Penalty Parameter Value
ovendata                Removal data for the Ovenbird
parboot                 Parametric bootstrap for 'unmarked' models
pcount                  Fit the N-mixture model of Royle (2004)
pcount.spHDS            Fit spatial hierarchical distance sampling
                        model.
pcountOpen              Fit the open N-mixture models of Dail and
                        Madsen (2011) and Hostetler and Chandler (2015)
piFuns                  Compute multinomial cell probabilities
plotEffects             Plot marginal effects of covariates in unmarked
                        models
pointtran               Simulated point-transect data
posteriorSamples        Draw samples from the posterior predictive
                        distribution
powerAnalysis           Conduct a power analysis for an 'unmarked'
                        model
predict                 Predict from fitted models and other unmarked
                        objects
randomTerms             Extract estimates of random effect terms
ranef                   Estimate posterior distributions of latent
                        occupancy or abundance
residuals               Calculate residuals from a model
richness                Estimate posterior distributions of site
                        richness
shinyPower              Launch a Shiny app to help with power analysis
sigma                   Extract estimates of random effect standard
                        deviations
simulate                Simulate datasets from any 'unmarked' model
                        type
unmarked-package        Models for Data from Unmarked Animals
unmarkedEstimate-class
                        Class "unmarkedEstimate"
unmarkedEstimateList-class
                        Class "unmarkedEstimateList"
unmarkedFit-class       Class "unmarkedFit"
unmarkedFrame           Create an unmarkedFrame, or one of its child
                        classes.
unmarkedFrame-class     Class "unmarkedFrame"
unmarkedFrameDS         Organize data for the distance sampling model
                        of Royle et al. (2004) fit by distsamp
unmarkedFrameDSO        Create an object of class unmarkedFrameDSO that
                        contains data used by distsampOpen.
unmarkedFrameGDR        Organize data for the combined distance and
                        removal point-count model of Amundson et al.
                        (2014) fit by 'gdistremoval'
unmarkedFrameMMO        Create an object of class unmarkedFrameMMO that
                        contains data used by multmixOpen.
unmarkedFrameMPois      Organize data for the multinomial-Poisson
                        mixture model of Royle (2004) fit by
                        multinomPois
unmarkedFrameOccu       Organize data for the single season occupancy
                        models fit by occu and occuRN
unmarkedFrameOccuCOP    Organize data for the occupancy model using
                        count data fit by 'occuCOP'
unmarkedFrameOccuComm   Organize data for the community occupancy model
                        fit by occuComm
unmarkedFrameOccuFP     Organize data for the single season occupancy
                        models fit by occuFP
unmarkedFrameOccuMS     Organize data for the multi-state occupancy
                        model fit by occuMS
unmarkedFrameOccuMulti
                        Organize data for the multispecies occupancy
                        model fit by occuMulti
unmarkedFrameOccuTTD    Create an unmarkedFrameOccuTTD object for the
                        time-to-detection model fit by occuTTD
unmarkedFramePCO        Create an object of class unmarkedFramePCO that
                        contains data used by pcountOpen.
unmarkedFramePCount     Organize data for the N-mixture model fit by
                        pcount
unmarkedModSel-class    unmarkedModSel class and methods
unmarkedMultFrame       Create an unmarkedMultFrame, unmarkedFrameGMM,
                        unmarkedFrameGDS, or unmarkedFrameGPC object
unmarkedPower-methods   Methods for unmarkedPower objects
unmarkedPowerList       Summarize a series of unmarked power analyses
unmarkedRanef-class     Class '"unmarkedRanef"'
vcov-methods            Methods for Function vcov in Package 'unmarked'
vif                     Compute Variance Inflation Factors for an
                        unmarkedFit Object.
