build_system            Build the System File
calculate_halflife      Calculate the halflife of data
gg_axis                 Make Pretty ggplot x- or y-Axis Log 10 Scale
gg_log10_xaxis          Make Pretty ggplot x-Axis Log 10 Scale
gg_log10_yaxis          Make Pretty ggplot y-Axis Log 10 Scale
linspace                Implementation of the 'linspace' Function from
                        Matlab
logspace                Implementation of the 'logspace' Function from
                        Matlab
pad_string              Pad String with Spaces
prepare_figure          Make ggplot Figure Pretty
run_simulation_titrate
                        Simulate With Titration or Rule-Based Inputs
run_simulation_ubiquity
                        Simulate Individual Response
simulate_subjects       Run Population Simulations
som_to_df               Converts the Wide/Verbose Output Simulation
                        Functions into Data Frames
system_check_requirements
                        Check For Perl and C Tools
system_check_steady_state
                        Verify System Steady State
system_clear_cohorts    Clear all Cohorts
system_define_cohort    Define Estimation Cohort
system_define_cohorts_nm
                        Define Cohorts from NONMEM Input File
system_estimate_parameters
                        Control Estimation Process
system_fetch_TSsys      Fetch System Timescale
system_fetch_guess      Fetch Current Parameter Guesses
system_fetch_iiv        Fetch Variability Terms
system_fetch_nca        Fetch NCA Results
system_fetch_nca_columns
                        Columns in NCA Analysis
system_fetch_parameters
                        Fetch System Parameters
system_fetch_rpt_officer_object
                        Extracts the officer Object From the Specified
                        ubiquity Report
system_fetch_rpt_onbrand_object
                        Extracts the onbrand Object From the Specified
                        ubiquity Report
system_fetch_set        Fetch Mathematical Set
system_fetch_template   Create New Analysis Template
system_glp_init         Initialize GLP study design
system_glp_scenario     Design GLP Study For a Scenario
system_load_data        Loading Datasets
system_log_debug_save   Save variables to files
system_log_init         Initialize System Log File
system_nca_parameters_meta
                        List NCA parameters, text names and
                        descriptions
system_nca_run          Automatic NCA
system_nca_summary      Summarize NCA Results in Tabular Format
system_new              Create New 'system.txt' File
system_new_list         Fetch List of Available System Templates
system_new_tt_rule      Titration Rules
system_od_general       General Observation Details Function
system_plot_cohorts     Plot Estimation Results
system_rpt_add_doc_content
                        Adds Content to a Word Report
system_rpt_add_slide    Add Slide to a Powerpoint Report
system_rpt_estimation   Generate a Report from Parameter Estimation
system_rpt_nca          Report NCA
system_rpt_read_template
                        Initialize a New Report
system_rpt_save_report
                        Save Report to a File
system_rpt_template_details
                        Generate Details about Report Template
system_select_set       Selecting Parameter Sets
system_set_bolus        Set Bolus Inputs
system_set_covariate    Set Covariate Values
system_set_guess        Alter Initial Guess and Parameter Bounds
system_set_iiv          Set Variability Terms
system_set_option       Setting Analysis Options
system_set_parameter    Set Value for Parameter
system_set_rate         Set Infusion Rate Inputs
system_set_rpt_officer_object
                        Sets the officer Object for the Specified
                        ubiquity Report
system_set_rpt_onbrand_object
                        Sets the onbrand Object for the Specified
                        ubiquity Report
system_set_tt_cond      Define Titration Triggers and Actions
system_set_tt_rate      Actual Function Called by 'SI_TT_RATE'
system_simulate_estimation_results
                        Simulate Results at Estimates
system_view             View Information About the System
system_zero_inputs      Zero All Model Inputs
tic                     Implementation of Matlab 'tic()' command
toc                     Implementation of Matlab 'toc()' command
var2string              Converts Numeric Variables into Padded Strings
vp                      Print and Log Messages
workshop_fetch          Fetch Ubiquity Workshop Sections
